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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaaatccttgttttgtttggttaatgtctttcacctgtaattccatgcaaatttcaacaaggtttgaaactgaggaattgcccatttcttgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATAAAGAAGCAAACTGAATCAGCTGAGGTTGCGTTTCCTAAGACAGAGTTG

Basic information

species Glycine max
transcript GLYMA20G31760.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208039762|gb|GD838490.1|GD838490
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAGGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193543207|gb|FK502470.1|FK502470
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTTGAAAGATGCGAATATACTAATGGAAGAGA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAA-TTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|208209626|gb|GE004345.1|GE004345
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193710399|gb|FK648655.1|FK648655
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193633314|gb|FK582886.1|FK582886
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208158290|gb|GD956867.1|GD956867
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208316022|gb|GE110990.1|GE110990
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208256540|gb|GE054037.1|GE054037
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207773008|gb|GD744916.1|GD744916
EST:     GGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: GGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193685340|gb|FK625800.1|FK625800
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208209894|gb|GE006419.1|GE006419
EST:     CGGGCAGTTTTAAG                         GTTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|208135113|gb|GD928832.1|GD928832
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193654022|gb|FK597010.1|FK597010
EST:     CGGGCAGTTTTAAG                         GTATTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207821979|gb|GD794334.1|GD794334
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193332005|gb|FK299429.1|FK299429
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193424631|gb|FK390746.1|FK390746
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208148041|gb|GD944127.1|GD944127
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|254345428|gb|GR855871.1|GR855871
EST:     TGTTATCCTGGTGAAGACGATTTGGCCATTGCTCGGGCAGTTTTAAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGA
genomic: TGTTATCCTGGTGAAGACGATTTGGCCATTGCTCGGGCAGTTTTAA-Ggtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|207844412|gb|GD814457.1|GD814457
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208131226|gb|GD931113.1|GD931113
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193697015|gb|FK635315.1|FK635315
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193348660|gb|FK314852.1|FK314852
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208298185|gb|GE092406.1|GE092406
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193478806|gb|FK447189.1|FK447189
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208153520|gb|GD945739.1|GD945739
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207716671|gb|GD698145.1|GD698145
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208317520|gb|GE116217.1|GE116217
EST:     CGGGCAGTTTTGAG                         GTACTTGTCTTCAGGCAATTCGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208150094|gb|GD951668.1|GD951668
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207733230|gb|GD710032.1|GD710032
EST:     CGGGCAGTTTTAAG                         GTTACTTTGTTCTTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAG
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TAC-TTG-TC-TTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAG
EST: gi|207783116|gb|GD757137.1|GD757137
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193370602|gb|FK334882.1|FK334882
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193689259|gb|FK632646.1|FK632646
EST:     CGGGCAG-TTTAAG                         GTACTTGTCTTCAGGCAA-TTGAAAGANGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207829276|gb|GD798154.1|GD798154
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193593608|gb|FK548002.1|FK548002
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208271397|gb|GE072603.1|GE072603
EST:     CGGGCAGTTTTAAG                         GTTACTTGTCTTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAG
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTC-TTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAG
EST: gi|193526419|gb|FK486661.1|FK486661
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207763580|gb|GD736667.1|GD736667
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcaaatttcaacaaggtttgaaactgaggaattgcccatttcttgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATAAAGAAGCAAACTGAATCAGCTGAGGTTGCGTTTCCTAAGACAGAGTTG
                                    cccatttctt  CT-rich tract
     aatttcaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taaaatccttgttttgtttggttaatgtctttcacctgtaattccatgcaaatttcaacaaggtttgaaactgaggaattgcccatttcttgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATAAAGAAGCAAACTGAATCAGCTGAGGTTGCGTTTCCTAAGACAGAGTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - -tgttttg
- - - - - - - - - - - - - - - - cacctgt
- - - - - - - - - - - - - - - - - - - - - -ccatgca