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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgtcaagctttattattttggtcaacaactgcattaactaatgcatactcgtcagataagttgtagacataaatatagcatacatgctttgctgcagATATGTTTCTGCTCAGAGGTACTCTGAAGCATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAG

Basic information

species Glycine max
transcript GLYMA20G31760.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193630930|gb|FK579065.1|FK579065
EST:     GATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAG                         ATATGTTTCTGCTCAGAGGTACTCTGAAGCATTAGATATCCTACATTCAGG
genomic: GATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAGgtttacacag ... tttgctgcagATATGTTTCTGCTCAGAGGTACTCTGAAGCATTAGATATCCTACATTCAGG
EST: gi|254345428|gb|GR855871.1|GR855871
EST:     GATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAG                         ATATGTTTCTGCTCAGAGGTACTCTGAAGCATTAGATATCCTACATTCAGG
genomic: GATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAGgtttacacag ... tttgctgcagATATGTTTCTGCTCAGAGGTACTCTGAAGCATTAGATATCCTACATTCAGG
EST: gi|298188366|gb|HO035059.1|HO035059
EST:     GATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAG                         ATATGTTTCTGGCTCAGAGGTACTCTGAAGCATTAGATATCCTACATTCAG
genomic: GATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAGgtttacacag ... tttgctgcagATATGTTTCT-GCTCAGAGGTACTCTGAAGCATTAGATATCCTACATTCAG
EST: gi|193644637|gb|FK589109.1|FK589109
EST:     GATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAG                         ATATGTTTCTGCTCAGAGGTA
genomic: GATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAGgtttacacag ... tttgctgcagATATGTTTCTGCTCAGAGGTA
EST: gi|193577191|gb|FK536596.1|FK536596
EST:     GATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAG                         ATATGTTTCTGCTCAGAGGTACTCTGAAGCATTAGATATCCTACATTCAGG
genomic: GATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAGgtttacacag ... tttgctgcagATATGTTTCTGCTCAGAGGTACTCTGAAGCATTAGATATCCTACATTCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatactcgtcagataagttgtagacataaatatagcatacatgctttgctgcagATATGTTTCTGCTCAGAGGTACTCTGAAGCATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAG
                                            ctttgct  CT-rich tract
                     tagacataaatata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttgtcaagctttattattttggtcaacaactgcattaactaatgcatactcgtcagataagttgtagacataaatatagcatacatgctttgctgcagATATGTTTCTGCTCAGAGGTACTCTGAAGCATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAG

- -tgtcaag
- - - - - - - - - - - - -caacaac
- - - - - - - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - - -gcatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcataca