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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactactgataggtttctgtagttgaatattaagttattaaccaccttggcacttgcaaaatcatatacttttgaattttgattttttaatataaaaatctcttaatgaatgaagttttgtgttaatttcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAACAGCAACTTCTACAGAACGTTCCAATAATTATATATATTTTTTTCTTCT

Basic information

species Glycine max
transcript GLYMA20G31760.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193529161|gb|FK484352.1|FK484352
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|208267519|gb|GE065154.1|GE065154
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|207843151|gb|GD815101.1|GD815101
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193350795|gb|FK318667.1|FK318667
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193729073|gb|FK665125.1|FK665125
EST:     TTGGAGTACAGTGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGA
EST: gi|193382184|gb|FK347565.1|FK347565
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|208321738|gb|GE124271.1|GE124271
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193335196|gb|FK297964.1|FK297964
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193343361|gb|FK307397.1|FK307397
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193626705|gb|FK575771.1|FK575771
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|208100340|gb|GD898454.1|GD898454
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193431528|gb|FK397358.1|FK397358
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193419602|gb|FK384008.1|FK384008
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|7285084|gb|AW597571.1|AW597571
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|208274683|gb|GE069687.1|GE069687
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|207697063|gb|GD679942.1|GD679942
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|207800593|gb|GD774590.1|GD774590
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGC
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGC
EST: gi|208267907|gb|GE068916.1|GE068916
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|208258202|gb|GE055825.1|GE055825
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCA
EST: gi|193491995|gb|FK456547.1|FK456547
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193585671|gb|FK541197.1|FK541197
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACGCTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|207829566|gb|GD804044.1|GD804044
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|208202401|gb|GD995714.1|GD995714
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193583627|gb|FK539303.1|FK539303
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAA
EST: gi|208195935|gb|GD988126.1|GD988126
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193346177|gb|FK310565.1|FK310565
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAG
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAG
EST: gi|207833801|gb|GD807634.1|GD807634
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|207823151|gb|GD794904.1|GD794904
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|207701734|gb|GD681957.1|GD681957
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAA
EST: gi|193689697|gb|FK632272.1|FK632272
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193726210|gb|FK656472.1|FK656472
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|208151459|gb|GD946478.1|GD946478
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|207831630|gb|GD802594.1|GD802594
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATG-TTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193398377|gb|FK362927.1|FK362927
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGGCAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193696236|gb|FK636584.1|FK636584
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193559225|gb|FK512078.1|FK512078
EST:     TTGGAGTACAGTGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGA
EST: gi|193476785|gb|FK440374.1|FK440374
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193401128|gb|FK370127.1|FK370127
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|208315256|gb|GE113122.1|GE113122
EST:     TGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGA
genomic: TGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATT-CAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGA
EST: gi|193638169|gb|FK586663.1|FK586663
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|208260197|gb|GE057707.1|GE057707
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
EST: gi|193669011|gb|FK613599.1|FK613599
EST:     TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAG                         TTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA
genomic: TTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGgtgactactg ... tcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttaatataaaaatctcttaatgaatgaagttttgtgttaatttcttatgcagTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAACAGCAACTTCTACAGAACGTTCCAATAATTATATATATTTTTTTCTTCT
                                     tgttaat  putative branch site (score: 3)
                                           tttcttat  CT-rich tract
     aatataaaaatctctt  TA-rich tract