1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
TGACAATCCAGGACACAATCGTCGGCCAACTCGTGGTAGCGAAGACGCACTTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaactagttaatgtagtttgttattcattttgcatgtggtatgtctaaatgctgagggatgctgaattaattagtgattatttcggttcgttagt...
species | Glycine max |
transcript | GLYMA20G31490.2 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|208245912|gb|GE044784.1|GE044784
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|193562656|gb|FK519131.1|FK519131
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCAACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGEST: gi|207802579|gb|GD772112.1|GD772112
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCA-CAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGEST: gi|254315381|gb|GR825190.1|GR825190
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCA-CTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|254315380|gb|GR825189.1|GR825189
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|192303414|gb|FG995666.1|FG995666
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|193528704|gb|FK483534.1|FK483534
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|207796510|gb|GD767914.1|GD767914
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCG
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACAATCCAGGACACAATCGTCGGCCAACTCGTGGTAGCGAAGACGCACTTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaactagttaatgtagtttgttattcattttgcatgtggtatgtctaaatgctgagggatgctgaattaattagtgattatttcggttcgttagt
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA