1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtgaggagctagtgacaataatgtttattgtaaatatgacagttctcattatttgtttgttttccttcaaaatgagttttgctttttacttttggaacaagatgttttgatgtgatgttccatcttatgttggtctcttccagGGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAG
species | Glycine max |
transcript | GLYMA20G31490.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ATTATCTGCTGCATTCTGGCATTCAGTGGGGAGCAGCACCTGCAGTTAAA GGTGTCCGTGATGCAGCAGTAGAGTTGCTGEST: gi|193451540|gb|FK417960.1|FK417960
genomic: ATTATCTGCTGCATTCTGGCATTCAGTGGGGAGCAGCACCTGCAGTTAAAgtgaggagct ... tctcttccagGGTGTCCGTGATGCAGCAGTAGAGTTGCTG
EST: ATTATCTGCTGCATTCTGGCATTCAGTGGGGAGCAGCACCTGCAGTTAAA GGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACAEST: gi|208167959|gb|GD966045.1|GD966045
genomic: ATTATCTGCTGCATTCTGGCATTCAGTGGGGAGCAGCACCTGCAGTTAAAgtgaggagct ... tctcttccagGGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACA
EST: ATTATCTGCTGCATTCTGGCATTCAGTGGGGAGCAGCACCTGCAGTTAAA GGTGTCCGTGATGCAGCAGTAGAGTTGEST: gi|208175894|gb|GD977247.1|GD977247
genomic: ATTATCTGCTGCATTCTGGCATTCAGTGGGGAGCAGCACCTGCAGTTAAAgtgaggagct ... tctcttccagGGTGTCCGTGATGCAGCAGTAGAGTTG
EST: CACCTGCAGTTAAA GGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATEST: gi|193433941|gb|FK403257.1|FK403257
genomic: CACCTGCAGTTAAAgtgaggagct ... tctcttccagGGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCAT
EST: CATTCTGGCTATTTCAGTGGGGAGCAGCACCTGCAGTTAAA GGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATEST: gi|207789886|gb|GD759567.1|GD759567
genomic: CATTCTGGC-A-TTCAGTGGGGAGCAGCACCTGCAGTTAAAgtgaggagct ... tctcttccagGGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCAT
EST: ATTATCTGCTGCATTCTGGCATTCAGTGGGGAGCAGCACCTGCAGTTAAA GGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATEST: gi|192303414|gb|FG995666.1|FG995666
genomic: ATTATCTGCTGCATTCTGGCATTCAGTGGGGAGCAGCACCTGCAGTTAAAgtgaggagct ... tctcttccagGGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCAT
EST: ATTATCTGCTGCATTCTGGCATTCAGTGGGGAGCAGCACCTGCAGTTAAA GGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCAT
genomic: ATTATCTGCTGCATTCTGGCATTCAGTGGGGAGCAGCACCTGCAGTTAAAgtgaggagct ... tctcttccagGGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCAT
cttttggaacaagatgttttgatgtgatgttccatcttatgttggtctcttccagGGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAG
ttttgat putative branch site (score: 4)
tctcttcc putative PPT
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggagctagtgacaataatgtttattgtaaatatgacagttctcattatttgtttgttttccttcaaaatgagttttgctttttacttttggaacaagatgttttgatgtgatgttccatcttatgttggtctcttccagGGTGTCCGTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC