Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAATGAAGCAACAAAGTCAGAGGATATGTTTATGCAACTTCAAGAAATTCAAGAATCTGTCAGACTTGCATTTTTAAATTGCTTCCTGGATTTTGCTGgtatgttgggtttagttaatcttatacccaatagcatgcttttccagaaaaaagaaattaaagaaaataaaagatagcaaaaggacataaaggtgtcagagcacataaagttgcagttataaatcagcttttgtttaattgtcag

Basic information

species Glycine max
transcript GLYMA20G31490.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31490.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os04g34450.1 (Oryza sativa), 5'ss of exon 14
AGGAATGAAGCAACAAAGTCAGAGGATATGTTTATGCAACTTCAAGAAATTCAAGAATCTGTCAGACTTGCATTTTTAAATTGCTTCCTGGATTTTGCTGgtatgttgggtttagttaatcttatacccaatagcatgcttttccagaaaaaagaaattaaagaaaataaaagatagcaaaaggacataaaggtgtcagagcacataaagttgcagttataaatcagcttttgtttaattgtcag
|||| |||  |  | |||||  | ||||| | |   || || || |||||||| ||||||||||||||||||||| ||||||  || ||||||||||||||||||   | |||  ||  |    || | | |   | | | || || ||    | |  |||       |  |   |  |    |||| |   |||| || |||                                          
AGGAGTGAGACTGCCAAGTCTTACGATATTTCTCAACACCTCCATGAAATTCATGAATCTGTCAGACTTGCATTTCTAAATTCTTTTCTGGATTTTGCTGgtatg---gattttctttgtaacgtaactactg--aaggtcttaca-aattttgtatctaattgttgcatcatccattatt--gaca-agctgtgttagtgcatcag--------------------------------------

upper sequence: GLYMA20G31490.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G044681_T01 (Zea mays), 5'ss of exon 14
AGGAATGAAGCAACAAAGTCAGAGGATATGTTTATGCAACTTCAAGAAATTCAAGAATCTGTCAGACTTGCATTTTTAAATTGCTTCCTGGATTTTGCTGgtatgttgggtttagttaatcttatacccaatagcatgcttttccagaaaaaagaaattaaagaaaataaaagatagcaaaaggacataaaggtgtcagagcacataaagttgcagttataaatcagcttttgtttaattgtcag
| ||  ||  |  | |||||| | || || | |   | |||||| |||||| | || |||||||||||||||||||| |||| ||| ||||||||||||||||||     | ||  ||     |     | |    |  || || ||      |   |   | ||  |   | || ||   ||                                                              
ATGAGCGAGACTGCGAAGTCATATGACATTTCTCAACCACTTCAGGAAATTAATGAGTCTGTCAGACTTGCATTTTTGAATTCCTTTCTGGATTTTGCTGgtatga-atctctaagtagctagagg---atttttttaattctctagtc----gtggtctgaaaatctttgacattgcttcag--------------------------------------------------------------

upper sequence: GLYMA20G31490.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G050647_T01 (Zea mays), 5'ss of exon 14
AGGAATGAAGCAACAAAGTCAGAGGATATGTTTATGCAACTTCAAGAAATTCAAGAATCTGTCAGACTTGCATTTTTAAATTGCTTCCTGGATTTTGCTGgtatgttgggtttagttaatcttatacccaatagcatgcttttccagaaaaaagaaattaaagaaaataaaagatagcaaaaggacataaaggtgtcagagc-acataaagttgcagttataaatcagcttttgtttaattgtcag
| ||  ||  |  | |||||| | || || | |   | |||||| |||||  | || ||||| |||||||||||||| |||| ||| ||||| ||||||||||||     |||   |||     || | |   | |   ||||      |  |     ||   |   |  |  |  |||    |    || ||||  |||||    | |  |                                  
ATGAGCGAGACTGCGAAGTCATATGACATTTCTCAACCACTTCAGGAAATCAATGAGTCTGTTAGACTTGCATTTTTGAATTCCTTTCTGGACTTTGCTGgtatg---aatttctctaa----gtagctagaggaaccttttt---agcatcattctctagtcatggtctagaagggcaggctggtgcaatggtg--agagctgtgtgacct----------------------------------

upper sequence: GLYMA20G31490.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G21170.1 (Arabidopsis thaliana), 5'ss of exon 14
AGGAATGAAGCAACAAAGTCAGAGGATATGTTTATGCAACTTCAAGAAATTCAAGAATCTGTCAGACTTGCATTTTTAAATTGCTTCCTGGATTTTGCTGgtatgttgggtttagttaatcttatacccaatagcatgcttttccagaaaaaagaaattaaagaaaataaaagatagcaaaaggacataaaggtgtcagagcacataaagttgcagttataaatcagcttttgtttaattgtcag
|    ||||||  | |  || || |||||||||  |||  || |||||||||    |||||| |||||||| ||||| || ||||| |||||||||||||||| | |   |  |   || |||      ||   ||||  |         | |       |  ||  |    |    ||||| || ||     ||| |     |  |  | |      | | |||||                  
AAAGGTGAAGCTGCTAGATCCGAAGATATGTTTGCGCATATTGAAGAAATTCTGATATCTGTTAGACTTGCCTTTTTGAACTGCTTTCTGGATTTTGCTGgtaagctttttaca-ccaaacttccgtgaaagtacatgtat---------agatgcccacataaatgtgtgggcagacaaaaagaaatttttatgttaatatgctaattgatttttgcacatatcag------------------

upper sequence: GLYMA20G31490.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv18s0072g00720.t01 (Vitis vinifera), 5'ss of exon 14
AGGAATGAAGCAACAAAGTCAGAGGATATGTTTATGCAACTTCAAGAAATTCAAGAATCTGTCAGACTTGCATTTTTAAATTGCTTCCTGGATTTTGCTGgtatgttgggtttagttaatcttatacccaatagcatgcttttccagaaaaaagaaattaaagaaaataaaagatagcaaaaggacataaaggtgtcagagcacataaagttgcagttataaatcagcttttgtttaattgtcag
|||| ||| ||    ||||||||||||||||| ||||| |||||||| |||||||||||| | || || |||||| | ||||| |||||  ||||| |||||||  |  | | ||| |    |||| | | |   | |  |  |            | |||  ||||||     | || | |  | || | | ||| |       |  | |   |                              
AGGAGTGAGGCTCTGAAGTCAGAGGATATGTTCATGCATCTTCAAGAGATTCAAGAATCTATTAGGCTGGCATTTCTGAATTGTTTCCTACATTTTTCTGgtat--tatgatgagtca---ctatatc-agttttacgtctggctg----------actaataaaaatatttctt-gctacactaaattatgttgttatcctttgtgcactaataag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023282|gb|BM094316.1|BM094316
EST:     TCAAGAATCTGTCAGACTTGCATTTTTAAATTGCTTCCTGGATTTTGCTG                         GTAGTTTAGAGCGTATTGGGTTCGAACTTGGCCAACATAGAACAGATGAAG
genomic: TCAAGAATCTGTCAGACTTGCATTTTTAAATTGCTTCCTGGATTTTGCTGgtatgttggg ... taattgtcagGTAGTTTAGAGCGTATTGGGTTCGAACTTGGCCAACATAGAACAGATGAAG