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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTGgtttgttttgctaccttttcgcttgattttcattccttttatactttatgccaagttattgtcatccaggacttaagaggtgatttaatgtgtgctataa...

Basic information

species Glycine max
transcript GLYMA20G31220.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31220.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g01800.t01 (Vitis vinifera), 5'ss of exon 7
GCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTGgtttgttttgctaccttttcgcttgattttcattccttttatactttatgccaagttattgtcatccaggacttaagaggtgatttaatgtgtgctataa
|| |||||||||||||||||||||||| | ||||||||||||||   |||||       |  | | |  || |||  || |  |  |      ||||     |||    || |   |  || ||  ||        
GCGCAGATAATGCTAGGAATGGTGACTCCTCAAGTGgtttgtttcattacctc--aaactattgtgcgatcatttattattcaacacttga--attgcatgacagatactatgtaatctttgaacttgcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7326535|gb|AW620333.1|AW620333
EST:     GCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTG                         TTACAAATGCCAAACCTTAGGCTG
genomic: GCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTGgtttgttttg ... atttttgcagTTACAAATGCCAAACCTTAGGCTG