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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCCGAAAATGATAAAGGGAATGATAGAAATCGAGAACAGgtatactgtcaaaacttcttcgaatactgacaagttagttattctcccaaatctttgctgtgtttactttaaagaaagtgcagtaaatcacctgaaaaga...

Basic information

species Glycine max
transcript GLYMA20G31220.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31220.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g07490.1 (Oryza sativa), 5'ss of exon 3
GAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCCGAAAATGATAAAGGGAATGATAGAAATCGAGAACAGgtatactgtcaaaacttcttcgaatactgacaagttagttattctcccaaatct---ttgctgtgtttactttaaag---aaagtgcagtaaatcacctgaaaaga
 ||||| || || || ||||| ||||||||||||||||| || || ||||| ||||||||||| |||||||  |       ||| |||||  ||||| ||||  |   ||   | ||  |    |||||   |   |     | || ||| |     || || |||| |  | | ||     | |||  |   || | ||||    
AAGTGCACGCCGGAACCTTCAAGGTTATGAAATTAATGGCCGTCAGTTACGTGTTGATTTTGCTGAAAATGGGAGGAATGCTGACAGAAACAGAGAAAAGgtcgaagatcctcagtttct----tactgtagaagaaacacatttctcaacttccaattcctatgttaagatgagagcttgtattgctttggttcccatgaatg--

upper sequence: GLYMA20G31220.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G71800.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCCGAAAATGATAAAGGGAATGATAGAAATCGAGAACAGgtatactgtcaaaacttcttcgaatactgacaagttagttattctcccaaatctttgctgtgtttact-ttaaagaaagtgcagtaaatcacctgaaaaga
 |||||||| || ||||||||| |||||||||| ||||| || |||||| | ||||||||||| || ||||| ||||| | ||| | ||  || || ||||| ||||       ||  |||   |    |   ||| | |  | |   |    | |   |   |||    ||||||  ||  | |                
AAGTGCTCGTCGTAATCTTCAGAGTTATGAAATCAATGGTCGTCAATTAAGAGTTGATTTTGCTGAGAATGACAAAGGCACTGACAAAACCCGTGATCAGgt-tactcctctctctctttcttctttcaat--gttggatggtttttaactgttgtcaagaagttataactaaagatggtaaatttgggttttcag-----

upper sequence: GLYMA20G31220.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g01800.t01 (Vitis vinifera), 5'ss of exon 3
GAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCCGAAAATGATAAAGGGAATGATAGAAATCGAGAACAGgtatactgtcaaaacttcttcgaatactgacaagttagttattctcccaaatctttgctgtgtttactttaa--agaaagtgcagtaaatcacctgaaaaga------
 |||||||| || ||||||||||| ||||| || ||||| ||||||||||| || |||||||| ||||||||||||||   |||  ||||| |||||||||||     |  | |   ||       ||   || |   | ||| || |   | |||  | || ||  ||| |  |  |||  |  | | |  | |   |         
AAGTGCTCGTCGTAATCTTCAGGGCTATGAGATCAATGGCCGGCAATTACGAGTCGATTTTGCTGAAAATGATAAAGGTGCTGACCGAAATAGAGAACAGgtaagacttttagatgcct-----ggctatgaaatccttcattttctc---tgtttattttgcttggtttcatcatgaaggtccatgactttcttaggagtctgaaga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4313812|gb|AI460931.1|AI460931
EST:     GCGTTGATTTTGCCGAAAATGATAAAGGGAATGATAGAAATCGAGACCAG                         GGTCGTGGCGGTCCTGGAATGACA
genomic: GCGTTGATTTTGCCGAAAATGATAAAGGGAATGATAGAAATCGAGAACAGgtatactgtc ... tctggcacagGGTCGTGGCGGTCCTGGAATGACA