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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgtttcagcgttgttgaacttggatctatattttgccagaaatcaatgatttggataatttctctgatcattatgttcataatttgctgtatatgcagGCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTG

Basic information

species Glycine max
transcript GLYMA20G31220.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31220.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0001g01800.t01 (Vitis vinifera), 3'ss of exon 6
--tctgtttcagcgttgt-tgaacttggatctatattttgccagaaatcaatgatttggataatttc-tctgatcattatgttcataatttgctgtatatgcagGCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTG
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tgtcattattaatattatatacatcatcgtcatcattttaatgatgacatttgccacacactacttcatctgacaagt-tgttgttgaacttccac---tgcagGCGCAGATAATGCTAGGAATGGTGACTCCTCAAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7326535|gb|AW620333.1|AW620333
EST:     CTCGCCAGCTGTTGCTTTCAAGGCCGCAGTTGCCCAAGGCTCTTTTTCAG                         GCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTG
genomic: CTCGCCAGCTGTTGCTTTCAAGGCCGCAGTTGCCCAAGGCTCTTTTTCAGgtctgtactt ... gtatatgcagGCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgatttggataatttctctgatcattatgttcataatttgctgtatatgcagGCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTG
                  ctctgat  putative branch site (score: 4)
                          attatgttcataattt  TA-rich tract