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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccaatttctgtgcgtttgtgtaggtcaaaatactggaatcttgtgctgaatatcagttttatttcagattaaattgattctttttctcttctggcacagGGTCGTGGCGGTCCTGGAATGACAACAAATGTTG

Basic information

species Glycine max
transcript GLYMA20G31220.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4313812|gb|AI460931.1|AI460931
EST:     GCGTTGATTTTGCCGAAAATGATAAAGGGAATGATAGAAATCGAGACCAG                         GGTCGTGGCGGTCCTGGAATGACA
genomic: GCGTTGATTTTGCCGAAAATGATAAAGGGAATGATAGAAATCGAGAACAGgtatactgtc ... tctggcacagGGTCGTGGCGGTCCTGGAATGACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgaatatcagttttatttcagattaaattgattctttttctcttctggcacagGGTCGTGGCGGTCCTGGAATGACAACAAATGTTG
                           aattgat  putative branch site (score: 4)
                             ttgattctttttctct  CT-rich tract
            ttttatttcagattaa  TA-rich tract