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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGAGTGCATGGAAGAATATATTCTTCAGGCGATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtgaaagtacatgttcttataatccatctttccttttaaacatcttgatctgtatcctccctcctctctttgtcttttccatgagaggaagtat...

Basic information

species Glycine max
transcript GLYMA20G31000.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51334808|gb|CO978674.1|CO978674
EST:     ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA                         GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: gi|207817922|gb|GD791885.1|GD791885
EST:     AACTGTCAGCGGAATAAATTACACA                         GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
genomic: AACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: gi|193579600|gb|FK537699.1|FK537699
EST:     ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA                         GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCG
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCG
EST: gi|57575392|gb|CX548367.1|CX548367
EST:     ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA                         GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: gi|58025229|gb|CX711970.1|CX711970
EST:     CCAGGCTCTATAACTGTCAGCGGAATAAATTACACA                         GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
genomic: CCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: gi|192301523|gb|FG994763.1|FG994763
EST:     ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA                         GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: gi|193508896|gb|FK465492.1|FK465492
EST:     CCAGGCTCTATAACTGTCAGCGGAATAAATTACACA                         GTTAGAGCTGGAAAAACTTTTGGTGACTATCGTCGCATACTCGCCCCAAGA
genomic: CCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: gi|207690830|gb|GD672538.1|GD672538
EST:     ATGGAAGGCCGTTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA                         GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: gi|193483488|gb|FK450155.1|FK450155
EST:     ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA                         GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGTCCCAAGA
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: gi|57575090|gb|CX548065.1|CX548065
EST:     ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA                         GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGGAGTGCATGGAAGAATATATTCTTCAGGCGATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtgaaagtacatgttcttataatccatctttccttttaaacatcttgatctgtatcctccctcctctctttgtcttttccatgagaggaagtat

- - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc