1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gttcctttgctacaattcttgatatttctcaactgcatgtttgtttttaagcttcactttgatgttgtaatttgggtctgttgattttctggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAG
species | Glycine max |
transcript | GLYMA20G31000.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAEST: gi|207817922|gb|GD791885.1|GD791885
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: AACTGTCAGCGGAATAAATTACACA GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAEST: gi|193579600|gb|FK537699.1|FK537699
genomic: AACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGEST: gi|57575392|gb|CX548367.1|CX548367
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCG
EST: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAEST: gi|58025229|gb|CX711970.1|CX711970
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: CCAGGCTCTATAACTGTCAGCGGAATAAATTACACA GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAEST: gi|192301523|gb|FG994763.1|FG994763
genomic: CCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAEST: gi|193508896|gb|FK465492.1|FK465492
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: CCAGGCTCTATAACTGTCAGCGGAATAAATTACACA GTTAGAGCTGGAAAAACTTTTGGTGACTATCGTCGCATACTCGCCCCAAGAEST: gi|207690830|gb|GD672538.1|GD672538
genomic: CCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: ATGGAAGGCCGTTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAEST: gi|193483488|gb|FK450155.1|FK450155
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGTCCCAAGAEST: gi|57575090|gb|CX548065.1|CX548065
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
EST: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACA GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
genomic: ATGGAAGGCCATTACCAGGCTCTATAACTGTCAGCGGAATAAATTACACAgtaagtgtga ... ggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGA
tttaagcttcactttgatgttgtaatttgggtctgttgattttctggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAG
tgttgat putative branch site (score: 4)
ttttctg CT-rich tract
ttgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctttgctacaattcttgatatttctcaactgcatgtttgtttttaagcttcactttgatgttgtaatttgggtctgttgattttctggactaacagGTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- -cctttgc
- - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgttg