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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTTTAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCAATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGCATGGGgtattaattctttggaattcacataataaattgcttgcttgatttatttatttaattatttttgtgatgtctactctgggctgagctgtttatttccagt...

Basic information

species Glycine max
transcript GLYMA20G31000.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31000.2 (Glycine max), 5'ss of exon 1
lower sequence: AT1G71696.2 (Arabidopsis thaliana), 5'ss of exon 8
TTTTTTTAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCAATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGCATGGGgtattaattctttggaa----ttcacataataaattgctt---gcttgatttatttatttaattatttttgtgatgtctactctgggctgagctgtttatttccagt------------------------------------------------------
|  ||| ||||| ||   | |||   ||||||||||||| |  ||||| |||| |||| |||||||||||||||||||||| || || ||| |||| |||||| |  | || | | |    |   |||| || |  |  |   |  ||    ||||      ||| |||   ||| | |     ||| |   |  | || |  ||                                                        
TCCTTTCAATGACGACTTGAATTTGAGGCAACCTGAAACTAAGGCAATTATGACTTGGCTGAGAGATATACGATTCACAGCGTCGGCTACTCTGCACGGGgtaattttcctgtagcagacttgtgcatactataacgtcttaagtatgtccaatttgaaagtttactttcaagat-tatgggagggggttttcaatgtaatgtcaaggaaaatcttgattcaatgtgaaaaaaatatttgctaaaccagcttttgttttag

upper sequence: GLYMA20G31000.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 8
TTTTTTTAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCAATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGCATGGGgtattaattctttggaattcacataataaattgcttgcttgatttatttatttaattatttttgtgatgtctactctgggct--gagctgtttatttccagt-
|  | | |||||||||| ||||   || ||||||||||||| |||||| ||||  ||||||| ||| ||||  |||||||||||||||| ||||||||||||  || |||| |   |||||  |  | |  | | ||||||    |  ||||  |   ||     |     ||||||         ||| ||  | | |  | 
TCCTCTGAATGATGATGTGGATGGACGACAACCTGAAACAAAAGCAATCATGAGGTGGTTGAAAGAGATACATTTCACAGCATCTGCCAGTTTGCATGGGgtgatacttctctattattcattt--ttatctccctgcttgccaaagctattacagc-ttgcgaaggctattactctacttctcatgctattactctaccttg