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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCGGAGGTGTGAAGATATATGTTGGGTAAAGACAAACAAAAGTAATGCAACTCCAGGACTGCGGCATGATTCACATACTTTATTTCAACATTCAAAGgtcagttaaaatttgctcttgtacatgcacaagttcagttcaacatttgagcttattacatgtagttattttgatactaaataaatatagtagtctttcttaactgttttgttttgttttgttatggtgaag

Basic information

species Glycine max
transcript GLYMA20G30130.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519534|gb|BM188576.1|BM188576
EST:     CAACTCCAGGACTGCGGCATGATTCACATACTTTATTTCAACATTCAAAG                         GAACACTGCTTGATGGGCATAAAAGGAACAGTTCGTCGAAGTACTGATGGA
genomic: CAACTCCAGGACTGCGGCATGATTCACATACTTTATTTCAACATTCAAAGgtcagttaaa ... tatggtgaagGAACACTGCTTGATGGGCATAAAAGGAACAGTTCGTCGAAGTACTGATGGA
EST: gi|7926223|gb|AW832249.1|AW832249
EST:     CAACTCCAGGACTGCGGCATGATTCACATACTTTATTTCAACATTCAAAG                         GAACACTGCTTGATGGGCATAAAAGGAACAGTTCGTCGAAGTACTGATGGA
genomic: CAACTCCAGGACTGCGGCATGATTCACATACTTTATTTCAACATTCAAAGgtcagttaaa ... tatggtgaagGAACACTGCTTGATGGGCATAAAAGGAACAGTTCGTCGAAGTACTGATGGA
EST: gi|10234239|gb|BE803127.1|BE803127
EST:     CAACTCCAGGACTGCGGCATGATTCACATACTTTATTTCAACATTCAAAG                         GAACACTGCTTGATGGGCATAAAAGGAACAGTTCGTCGAAGTACTGATGGA
genomic: CAACTCCAGGACTGCGGCATGATTCACATACTTTATTTCAACATTCAAAGgtcagttaaa ... tatggtgaagGAACACTGCTTGATGGGCATAAAAGGAACAGTTCGTCGAAGTACTGATGGA