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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactatctgaatattgaaaatccttacagaattagctttaattgttggctatggtttttatcatattctatttatgtcttatattgcttaatctcttcattatctgtttttctcttaattggtggggctgggtttctacagTGGGGTTTTCGGAGGTGTGAAGATATATGTTGGGTAAAGACAAACAAAAGTAATGCAACTCCAGGACTGCGGCATGATTCACATACTTTATTTCAACATT

Basic information

species Glycine max
transcript GLYMA20G30130.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519534|gb|BM188576.1|BM188576
EST:     GGGTGGGTGATGGTGTAGGCCTTGAACAAGGTCGTCAATGTCTAAAAAAG                         TGGGGTTTTCGGAGGTGTGAAGATATATGTTGGGTAAAGACAAACAAAAGT
genomic: GGGTGGGTGATGGTGTAGGCCTTGAACAAGGTCGTCAATGTCTAAAAAAGgtacactatc ... gtttctacagTGGGGTTTTCGGAGGTGTGAAGATATATGTTGGGTAAAGACAAACAAAAGT
EST: gi|7926223|gb|AW832249.1|AW832249
EST:     GGTCGTCAATGTCTAAAAAAG                         TGGGGTTTTCGGAGGTGTGAAGATATATGTTGGGTAAAGACAAACAAAAGT
genomic: GGTCGTCAATGTCTAAAAAAGgtacactatc ... gtttctacagTGGGGTTTTCGGAGGTGTGAAGATATATGTTGGGTAAAGACAAACAAAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaatctcttcattatctgtttttctcttaattggtggggctgggtttctacagTGGGGTTTTCGGAGGTGTGAAGATATATGTTGGGTAAAGACAAACAAAAGTAATGCAACTCCAGGACTGCGGCATGATTCACATACTTTATTTCAACATT
                          tcttaat  putative branch site (score: 3)
                                              tttctac  putative PPT
                    tttttctcttaatt  TA-rich tract