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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcttagtaaattgtaaaaataaataaattctttgtgcaacgtctttgcattatactgccctgtttgttcctaaaattaatgattttctccatcgggcagGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACGTACATTGAGCAAGGGCATATACGAGTTGGTCCAGAG

Basic information

species Glycine max
transcript GLYMA20G30110.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30110.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0083g00950.t01 (Vitis vinifera), 3'ss of exon 3
--------ttcttagtaaattgtaaaaataaataaattctttgtgcaacgtctttgcattatactgccctgtttgttcctaaaattaatgattttctccatcgggcagGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACGTACATTGAGCAAGGGCATATACGAGTTGGTCCAGAG
        ||| |  ||   ||||  |||   |   || | ||  | || |||| |   || |     || ||  ||   |  |||| |   |       |   ||||||| ||||| |||||||| |||||| || | || ||||| |||||||||||||||||||| ||||||||||||||||| || || || || |||||||| 
aatcttcattccttttatcctgtatcaat---tgggttgtgtgctccac-tcttggtgctaaat----ctcttgttttgcatgattatttgctcatatgttgttgcagGCGCAGGCTTTCAACTGTGTTGGTGCGATTGAAGTTTGCAGAGCACTTGAAAGAAGCTGTAACGTACATTGAGCAAGGACACATCCGGGTGGGTCCAGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208180362|gb|GD974949.1|GD974949
EST:     CATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: CATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|208180362|gb|GD974949.1|GD974949
EST:     CATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: CATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|208180362|gb|GD974949.1|GD974949
EST:     CATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: CATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|193611512|gb|FK560804.1|FK560804
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|207821229|gb|GD792268.1|GD792268
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|193350398|gb|FK317458.1|FK317458
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGA
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGA
EST: gi|208263848|gb|GE065256.1|GE065256
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|192303433|gb|FG997463.1|FG997463
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACTTGAA
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACTTGAA
EST: gi|193703715|gb|FK634701.1|FK634701
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|193703715|gb|FK634701.1|FK634701
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|193703715|gb|FK634701.1|FK634701
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|58019754|gb|CX706496.1|CX706496
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|58019754|gb|CX706496.1|CX706496
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|58019754|gb|CX706496.1|CX706496
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|193497172|gb|FK462100.1|FK462100
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTT
EST: gi|208200904|gb|GD997367.1|GD997367
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|193722833|gb|FK657451.1|FK657451
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAG
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAG
EST: gi|207780295|gb|GD752664.1|GD752664
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|207780295|gb|GD752664.1|GD752664
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|207780295|gb|GD752664.1|GD752664
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|13477459|gb|BG507339.1|BG507339
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|193542662|gb|FK499307.1|FK499307
EST:     GCGAACGTTTAACTGTGTTCATCCTTCTGT                        
genomic: GCGAACGTTTAACTGTG-TCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|193542662|gb|FK499307.1|FK499307
EST:     GCGAACGTTTAACTGTGTTCATCCTTCTGT                        
genomic: GCGAACGTTTAACTGTG-TCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|193542662|gb|FK499307.1|FK499307
EST:     GCGAACGTTTAACTGTGTTCATCCTTCTGT                        
genomic: GCGAACGTTTAACTGTG-TCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|298174869|gb|HO014786.1|HO014786
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAAGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|208333718|gb|GE132027.1|GE132027
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTG
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTG
EST: gi|254317398|gb|GR826343.1|GR826343
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|192303434|gb|FG997464.1|FG997464
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GCGTAGGCTTTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACTTGAA
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACTTGAA
EST: gi|6725606|gb|AW310005.1|AW310005
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|6725606|gb|AW310005.1|AW310005
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|6725606|gb|AW310005.1|AW310005
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|208125791|gb|GD922025.1|GD922025
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTG
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTG
EST: gi|192303063|gb|FG994181.1|FG994181
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|192303063|gb|FG994181.1|FG994181
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|192303063|gb|FG994181.1|FG994181
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|192303062|gb|FG994180.1|FG994180
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|193710885|gb|FK641786.1|FK641786
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|254315762|gb|GR825571.1|GR825571
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|254315762|gb|GR825571.1|GR825571
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|254315762|gb|GR825571.1|GR825571
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|254315761|gb|GR825570.1|GR825570
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|208067998|gb|GD863622.1|GD863622
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|208067998|gb|GD863622.1|GD863622
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|208067998|gb|GD863622.1|GD863622
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|193602247|gb|FK556214.1|FK556214
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|298198944|gb|HO042307.1|HO042307
EST:     AACCAGGCAAAGCATCACACTGTGCGAACGTTTAACTGTGTCAACCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|208178376|gb|GD978329.1|GD978329
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|193529678|gb|FK483973.1|FK483973
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|193529678|gb|FK483973.1|FK483973
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|193529678|gb|FK483973.1|FK483973
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|208185877|gb|GD985386.1|GD985386
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|207833478|gb|GD806723.1|GD806723
EST:     ACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: ACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|207833478|gb|GD806723.1|GD806723
EST:     ACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: ACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|207833478|gb|GD806723.1|GD806723
EST:     ACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: ACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|208165147|gb|GD965039.1|GD965039
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|207826182|gb|GD799013.1|GD799013
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
EST: gi|193535766|gb|FK492660.1|FK492660
EST:     GCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: GCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|193535766|gb|FK492660.1|FK492660
EST:     GCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: GCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|58022797|gb|CX709538.1|CX709538
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|58022797|gb|CX709538.1|CX709538
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|58022797|gb|CX709538.1|CX709538
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|58016200|gb|CX702942.1|CX702942
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|58016200|gb|CX702942.1|CX702942
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|58016200|gb|CX702942.1|CX702942
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|208173402|gb|GD971619.1|GD971619
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|208173402|gb|GD971619.1|GD971619
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|208173402|gb|GD971619.1|GD971619
EST:     AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTCTGT                        
genomic: AACCAGGCAAAGCATCACACTATGCGAACGTTTAACTGTGTCATCCTTC--Tgtaggtaaac ... catcgggca
EST: gi|193601678|gb|FK553517.1|FK553517
EST:     ACCAGGCAAAGCATCACACTTATGCGAACGTTTAACTGTGTCATCCTTCT                         GTAGGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT
genomic: ACCAGGCAAAGCATCACACT-ATGCGAACGTTTAACTGTGTCATCCTTCTgtaggtaaac ... catcgggcagG----CGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcattatactgccctgtttgttcctaaaattaatgattttctccatcgggcagGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACGTACATTGAGCAAGGGCATATACGAGTTGGTCCAGAG
                                      ttttctccatc  CT-rich tract
                          taaaattaatgatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttcttagtaaattgtaaaaataaataaattctttgtgcaacgtctttgcattatactgccctgtttgttcctaaaattaatgattttctccatcgggcagGCGTAGGCTCTCAACTGTTTTGGTGAGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACGTACATTGAGCAAGGGCATATACGAGTTGGTCCAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG