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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCCGTTCTTTGCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttctttcttttaccgtttttcagtgtctccttgcttcgctgaatcgcatcttctttcattcagttttatatgatgcactgatacaatacatgat...

Basic information

species Glycine max
transcript GLYMA20G30110.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303433|gb|FG997463.1|FG997463
EST:     GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG                         TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: gi|58019754|gb|CX706496.1|CX706496
EST:     TACGAAGGAAAGCAATTTACTG                         TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: TACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: gi|13477459|gb|BG507339.1|BG507339
EST:     ATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG                         TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: ATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: gi|213589860|gb|DB969639.1|DB969639
EST:     GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG                         TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: gi|298174869|gb|HO014786.1|HO014786
EST:     GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG                         TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: gi|254317398|gb|GR826343.1|GR826343
EST:     ATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG                         TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: ATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: gi|192303062|gb|FG994180.1|FG994180
EST:     GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG                         TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: gi|254315761|gb|GR825570.1|GR825570
EST:     GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG                         TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: gi|298198944|gb|HO042307.1|HO042307
EST:     GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG                         TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: gi|58022797|gb|CX709538.1|CX709538
EST:     CGAAGGAAAGCAATTTACTG                         TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: CGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: gi|58016200|gb|CX702942.1|CX702942
EST:     CGAAGGAAAGCAATTTACTG                         TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: CGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGCCGTTCTTTGCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttctttcttttaccgtttttcagtgtctccttgcttcgctgaatcgcatcttctttcattcagttttatatgatgcactgatacaatacatgat

- - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA