Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGAAGGTTAATTTTTTGGAATGGAAGAGGGAAGGGGGTCACAGAGAGAACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattatttatattttctcatgctatgcaatttcctctgttttagattttagcttttagctgacacgttttatttttttgcctatgggatggtggaaatgtgaatag

Basic information

species Glycine max
transcript GLYMA20G30110.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30110.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0083g00950.t01 (Vitis vinifera), 5'ss of exon 1
TGAAGAAGGTTAATTTTTTGGAATGGAAGAGGGAAGGGGGTCACAGAGAGAACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattatttatattttctcatgctatgcaatttcctctgttttagattttagcttttagctgacacgtt-ttatttttttgcctatgggatggtggaaatgtgaatag
|||||||||| |||||  | ||||||||||| ||||| |||||||| ||   ||   ||||||| ||||||||||| || || || |||||||||||||||||  |      |||| |||   | |     |  ||  ||  || |  | |  ||||  | | ||| || ||||| |||||         |  |   | | ||||   
TGAAGAAGGTGAATTTCCTAGAATGGAAGAGAGAAGGTGGTCACAGGGAAGCCCATGTTATGCACCGCTACCATGTCACGGGCCGAGACGATTACAAAAAgtaa-accccagttttttcactttctcagtctctctaagtcctaaagatcaaatttt--ccgtcactttcttattgttttgaactacttttattc--attctgaa---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207823913|gb|GD794588.1|GD794588
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACAATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208244619|gb|GE038562.1|GE038562
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193350398|gb|FK317458.1|FK317458
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|192303433|gb|FG997463.1|FG997463
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|58019754|gb|CX706496.1|CX706496
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208037786|gb|GD834484.1|GD834484
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208196559|gb|GD989548.1|GD989548
EST:     ACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193497172|gb|FK462100.1|FK462100
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208200904|gb|GD997367.1|GD997367
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193395707|gb|FK362246.1|FK362246
EST:     CGGGACGA-TACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|207740598|gb|GD714746.1|GD714746
EST:     ACGATTACAAAAA                         ATATTCGGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193722833|gb|FK657451.1|FK657451
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|207696473|gb|GD678594.1|GD678594
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|13477459|gb|BG507339.1|BG507339
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208035153|gb|GD836393.1|GD836393
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|213589860|gb|DB969639.1|DB969639
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAA
EST: gi|298174869|gb|HO014786.1|HO014786
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193596888|gb|FK549134.1|FK549134
EST:     ACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208333718|gb|GE132027.1|GE132027
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|254317398|gb|GR826343.1|GR826343
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208033721|gb|GD828216.1|GD828216
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|192303434|gb|FG997464.1|FG997464
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|6725606|gb|AW310005.1|AW310005
EST:     GATTACATACA                         ATATTCAGGGTTTATTCCATATGGTTCAGAAGTTAGTAAACA-AATGAAAC
genomic: GATTACAAAAAgtattattta ... atgtgaatagATATTCA-GGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAAC
EST: gi|208125791|gb|GD922025.1|GD922025
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|192303063|gb|FG994181.1|FG994181
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|192303062|gb|FG994180.1|FG994180
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193460370|gb|FK426187.1|FK426187
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTG
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTG
EST: gi|193601759|gb|FK554788.1|FK554788
EST:     ACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|254315762|gb|GR825571.1|GR825571
EST:     CATTATGCAACGCTACCATG-TACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|254315761|gb|GR825570.1|GR825570
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208028797|gb|GD823237.1|GD823237
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208118129|gb|GD920066.1|GD920066
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193464444|gb|FK430986.1|FK430986
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193468964|gb|FK433280.1|FK433280
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193602247|gb|FK556214.1|FK556214
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|298198944|gb|HO042307.1|HO042307
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208178376|gb|GD978329.1|GD978329
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATAATGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|207685991|gb|GD669911.1|GD669911
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208185877|gb|GD985386.1|GD985386
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|207787280|gb|GD758791.1|GD758791
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208210868|gb|GE013063.1|GE013063
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208183343|gb|GD984057.1|GD984057
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193609674|gb|FK560674.1|FK560674
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|58022797|gb|CX709538.1|CX709538
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208237682|gb|GE032638.1|GE032638
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|58016200|gb|CX702942.1|CX702942
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA