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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACAGGGCAATCGTGCCCATTGTCATTCAAGGGAACACCTTACTGGATGGCTCCTGAGgttctaatattttctttaaaccttttttcttttatattttgattgtgtcttagatctgtggctcagtatcattgctttctgatgattcag

Basic information

species Glycine max
transcript GLYMA20G30100.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30100.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S10_200V6.2 (Physcomitrella patens), 5'ss of exon 9
ATAACAGGGCAATCGTGCCCATTGTCATTCAAGGGAACACCTTACTGGATGGCTCCTGAGgt-----tctaatattttctttaaaccttttttcttttatattttg-----attgtgtcttagatctgtggc------tcagtatcattgctttctgatgattcag-----------------------------------------------------
||  | |  ||||| |  |    ||| ||||||||||  |||||||||||||||||||||||     || ||  | |  || |      |     |||| || ||      ||  |     | |||    ||       | |||| | |    |    ||||  ||                                                     
ATTTCTGCTCAATCCTTTCTCCAGTCTTTCAAGGGAAGCCCTTACTGGATGGCTCCTGAGgtatgtgtcaaacgtataattgattatgctgactgtttacatcttacaaacatactcatccaaatcgtctgcatttagccggtattacttaaatgcagtgatggagctgttagagattcccctcctcaattacgatttaacatgattcttaattggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18690804|gb|BM519652.1|BM519652
EST:     AATCGTGCCCATTGTCATTCAAGGGAACACCTTACTGGATGGCTCCTGAG                         GTTATAAAAAATTCTAATGGATGCAACCTTGCGGTGGATATATGGAGTCTT
genomic: AATCGTGCCCATTGTCATTCAAGGGAACACCTTACTGGATGGCTCCTGAGgttctaatat ... gatgattcagGTTATAAAAAATTCTAATGGATGCAACCTTGCGGTGGATATATGGAGTCTT