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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagagataataactattcagtattcactgtatctgcatttaggctaaatgagttagatatgaacattggattgggatgcctagtgaaattatg...

Basic information

species Glycine max
transcript GLYMA20G30100.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30100.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g47240.2 (Oryza sativa), 5'ss of exon 7
GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagagataataactattcagtattcactgtatctgcatttaggctaaatgagttagatatg----aacattggattgggatgccta---gtgaaattatg
|||||| ||||| ||||||||||| |||||||| | |||||| || ||| | ||||| ||||| ||||||||||||||||| ||     |  |  | | |    |||   || |  || | ||  |  || |||  |  || |       ||||  |||       |||    | | || || 
GGATATTAAAGGTGCAAATATACTAGTAGATCCTAGTGGTCGTGTTAAGCTTGCAGATTTTGGAATGGCAAAACATgtaagttt-----ttctgcccacttta-attttttgaaaatg-acttttgtcaattgaactttattttccgtgtcattccatttctgcatctatgcctcatatcata

upper sequence: GLYMA20G30100.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 5'ss of exon 7
GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagagataataactattcagtattcactgtatctgcatttaggctaaatgagttagatatgaac--attggattgggatgcctagtgaaattatg
||| || ||||| ||||| |||||||||||||| | |||||| || ||| | || ||||| || ||||||||||||||||  |    | |   || | |  |  |   | | | ||| |||||      ||| | | | || | ||   |  | |||   |    || |    || | 
GGACATTAAAGGTGCAAACATACTGGTAGATCCTAATGGTCGTGTAAAGCTTGCTGACTTCGGAATGGCAAAACATgtaaattctctgtttcaaattgtaaaaaaaaaaatctttct-catttgtcaggaataactaaaatttaaagcaaaagcattattagatgtaattcc-ttgta

upper sequence: GLYMA20G30100.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G175504_T01 (Zea mays), 5'ss of exon 6
GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagaga---taataactattcagtattcactgtatctgcatttaggctaaatgagttagatatgaacattggattgggatgcctagtgaaattatg-
||| |||||||| || || ||||| ||| |||||| ||| || || ||| | ||||||||||| |||||||||||||||||  | ||||   |   | | ||||  || |   | ||   | | |||   |       |    | |  | |||| | |  |    ||  |    |||   
GGACATCAAAGGTGCCAACATACTAGTAAATCCAAGTGGCCGTGTTAAGCTTGCAGACTTTGGAATGGCAAAACATgtaagtcttgagagtctcgaagccattc--tacttggt-taaaagtagttaaaatgggccgatgttttctacatattgaaatatgg-atctgctatccttacat

upper sequence: GLYMA20G30100.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 7
GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagag-ataataactattcagtattcactgtatctgcatttaggctaaatgagttagatatgaacattggattgggatgcctagtgaaattatg-
 || |||||||| ||||| ||| ||||||| || | ||| || || ||| | || |||||||| ||||||||||||||||| ||   | ||  |  ||  |   ||||    | |      |  |   | ||  |  |||   |  |  ||      |||     || |   |  |  
AGACATCAAAGGTGCAAACATATTGGTAGACCCTAATGGCCGTGTAAAGCTTGCTGACTTTGGGATGGCAAAACATgtaagttttctgcatgttttcttattcctatttgtagaaagaaactcaaatgtcaacaa--tagtattttatcttcaccgaggaaatgcagcgcgttctttt

upper sequence: GLYMA20G30100.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 6
GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagagataataactattcagtattcactgtatctgcatttaggctaaatgagttagatatgaacattgga-ttgggatgcctagtgaa-attatg--
|||||| ||||| ||||||||||| ||||| |||| |||||| |||||||| ||||| ||||| |||||||| |||||||| ||  ||  |   ||| ||   ||||     | ||  ||   |    ||   |   ||  |||    ||| | |||| |     | |||   |||    
GGATATTAAAGGGGCAAATATACTTGTAGACCCAAGTGGTCGAGTCAAGTTAGCAGATTTTGGAATGGCAAAGCATgtaagtttgtaggcatatactttt---tatttgaaatgtcctcaaacaaaacaagc-atcaagcaatgggttttgaagttggtaaatggaatgattgttaaatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18690804|gb|BM519652.1|BM519652
EST:     GACTTTGGCATGGCAAAACAT                         ATAACAGGGCAATCGTGCCCATTGTCATTCAAGGGAACACCTTACTGGATG
genomic: GACTTTGGCATGGCAAAACATgtaagcttag ... taatttgcagATAACAGGGCAATCGTGCCCATTGTCATTCAAGGGAACACCTTACTGGATG