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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttctaattctaaatgatttaatgaatccaaaggttgcataatttgtcctgcttgccctacttataccttacataaactataccttacataatttgcagATAACAGGGCAATCGTGCCCATTGTCATTCAAGGGAACACCTTACTGGATGGCTCCTGAG

Basic information

species Glycine max
transcript GLYMA20G30100.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30100.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S10_200V6.2 (Physcomitrella patens), 3'ss of exon 8
----ttttctaattctaaatgatttaatgaatccaaaggttgcataatttgtcct--gcttgccctacttataccttacataaactataccttacataatttgcagATAACAGGGCAATCGTGCCCATTGTCATTCAAGGGAACACCTTACTGGATGGCTCCTGAG
    ||||| | | ||   || |||    ||| |     ||  ||  | | |  |  |   |  ||  || | ||| |  ||  ||    | |   | |  |||||||  | |  ||||| |  |    ||| ||||||||||  |||||||||||||||||||||
gtatttttccagtcct---tggtttttgaaatgctgcttttcgattctctcttgttagaaggtactctttgttcctcatgtatcctgagacat-tgtga--tgcagATTTCTGCTCAATCCTTTCTCCAGTCTTTCAAGGGAAGCCCTTACTGGATGGCTCCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18690804|gb|BM519652.1|BM519652
EST:     GACTTTGGCATGGCAAAACAT                         ATAACAGGGCAATCGTGCCCATTGTCATTCAAGGGAACACCTTACTGGATG
genomic: GACTTTGGCATGGCAAAACATgtaagcttag ... taatttgcagATAACAGGGCAATCGTGCCCATTGTCATTCAAGGGAACACCTTACTGGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcctgcttgccctacttataccttacataaactataccttacataatttgcagATAACAGGGCAATCGTGCCCATTGTCATTCAAGGGAACACCTTACTGGATGGCTCCTGAG
                                     accttac  putative branch site (score: 3)
                        ttacataaactata  TA-rich tract