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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcatcaatggaaccatttatagttgcttctcattttatttctccttctgcatcctcttgttattataataatatcatgcatctttgatcaattttcagGCTATTGGACAAGGAAGGAATCTTTCTAGCTTGGATTCAGATAGACTTTCTGTTCATTCTTCTAGATTTTTGAAAACTAATCCTCATGAAAG

Basic information

species Glycine max
transcript GLYMA20G30100.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18690804|gb|BM519652.1|BM519652
EST:     CTGAAGCTTTGGACCCTGTTTCTGGGATTACACAGGGAGCAAAAGCTCTG                         GCTATTGGACAAGGAAGGAATCTTTCTAGCTTGGATTCAGATAGACTTTCT
genomic: CTGAAGCTTTGGACCCTGTTTCTGGGATTACACAGGGAGCAAAAGCTCTGgtatgtaaaa ... caattttcagGCTATTGGACAAGGAAGGAATCTTTCTAGCTTGGATTCAGATAGACTTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctgcatcctcttgttattataataatatcatgcatctttgatcaattttcagGCTATTGGACAAGGAAGGAATCTTTCTAGCTTGGATTCAGATAGACTTTCTGTTCATTCTTCTAGATTTTTGAAAACTAATCCTCATGAAAG
                                      ctttgat  putative branch site (score: 5)
                                                ttttc  putative PPT
           tcttgttattataata  TA-rich tract