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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttttttttctaacatcctatattgcacattatcttaattcatataactgtcgaattatgagatgaatagaaattataacgtcaacagTTCAGTCATATTTTGGTGCCACCCTCTGCTGATATGCACGGACACTGGAAACAATGCAAGGCGAACCTGGCGGAGTGTACAGCAGACCAAATTGATACAC

Basic information

species Glycine max
transcript GLYMA20G29930.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336923|gb|CO980789.1|CO980789
EST:     ACATATCAACGCCATATTTTATTTTGAACTCTGCCTACGATGTATTCCAG                         TTCAGTCATATTTTGGTGCCACCCTCTGCTGATATGCACGGACACTGGAAA
genomic: ACATATCAACGCCATATTTTATTTTGAACTCTGCCTACGATGTATTCCAGgtaatttttt ... acgtcaacagTTCAGTCATATTTTGGTGCCACCCTCTGCTGATATGCACGGACACTGGAAA
EST: gi|151413033|gb|EV282841.1|EV282841
EST:     ACATATCAACGCCATATTTTATTTTGAACTCTGCCTACGATGTATTCCAG                         TTCAGTCATATTTTGGTGCCACCCTCTGCTGATATGCACGGACACTGGAAA
genomic: ACATATCAACGCCATATTTTATTTTGAACTCTGCCTACGATGTATTCCAGgtaatttttt ... acgtcaacagTTCAGTCATATTTTGGTGCCACCCTCTGCTGATATGCACGGACACTGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaattcatataactgtcgaattatgagatgaatagaaattataacgtcaacagTTCAGTCATATTTTGGTGCCACCCTCTGCTGATATGCACGGACACTGGAAACAATGCAAGGCGAACCTGGCGGAGTGTACAGCAGACCAAATTGATACAC
                                        ttataac  putative branch site (score: 2)
                             atgaatagaaattata  TA-rich tract