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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaaatttgaaatttacgcttcaaaagaaggtcatgtttgaacttttggcactgcgaatttttagtctgcggtatgattaaactactctatcttttacagACTATTGCAGAAGCGATTGGTGATTGGTATTTTAGTAGAAACATAAGCAAGGAAATAGATTGTGCATATCCTTGTGATGCAACTTGTCATAATCTTATAC

Basic information

species Glycine max
transcript GLYMA20G29930.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29930.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv16s0050g00570.t01 (Vitis vinifera), 3'ss of exon 11
caaaatttgaaatttacgcttcaaaagaaggtcatgtttgaacttttggcactgcgaatttttagtctgcggta--tgattaaactact--ctatcttttacagACTATTGCAGAAGCGATTGGTGATTGGTATTTTAGTAGAAACATAAGCAAGGAAATAGATTGTGCATATCCTTGTGATGCAACTTGTCATAATCTTATAC
    |||  | ||     | |    | |   |  ||||||    ||||    |     || |||   |  |  |  | | ||||   ||   |||||| |  ||||||| |||||||| |||||||| ||||| ||||| ||||  ||||  || || || || |||||||||||||||||  | |||||||||||||||||||
----attacatatcctatcattttcaaattttgttgtttgtttgtttgatttttttttttcttaaattaagaaaccttactaaaaacctaattatcttatttagACTATCGCAGAAGCAATTGGTGACTGGTACTTTAGCAGAAGGATAACTAAAGAGATTGACTGTGCATATCCTTGTGACACCACTTGTCATAATCTTATAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336923|gb|CO980789.1|CO980789
EST:     AACTACAAGAAACATGGTTTGGGGATGATTCTCCAAGAATAAACAATAAG                         ACTATTGCAGAAGCGATTGGTGATTGGTATTTTAGTAGAAACATAAGCAAG
genomic: AACTACAAGAAACATGGTTTGGGGATGATTCTCCAAGAATAAACAATAAGgtaccaatct ... tcttttacagACTATTGCAGAAGCGATTGGTGATTGGTATTTTAGTAGAAACATAAGCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcactgcgaatttttagtctgcggtatgattaaactactctatcttttacagACTATTGCAGAAGCGATTGGTGATTGGTATTTTAGTAGAAACATAAGCAAGGAAATAGATTGTGCATATCCTTGTGATGCAACTTGTCATAATCTTATAC
                                     ctactctatctttt  CT-rich tract
           aatttttagt  TA-rich tract