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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTTTAGCGACCTTTCACCATTGTGACAACTTCGCCAAGTATTTGCCAACGAATGCTAGTGTTAAATGCTTGAGTGATGCCGGTTTTTTTCTTGACGAgtatgatttgtctatcttgactcatttcaacataattataatattcatctgcatttcttcttcaaaatctaagtattaatgtttcatatccccttttgcag

Basic information

species Glycine max
transcript GLYMA20G29930.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29930.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0050g00570.t01 (Vitis vinifera), 5'ss of exon 6
GAGGTTTAGCGACCTTTCACCATTGTGACAACTTCGCCAAGTATTTGCCAACGAATGCTAGTGTTAAATGCTTGAGTGATGCCGGTTTTTTTCTTGACGAgtatgatttgtctatcttgactcatttcaacataattataatattcatctgcatttcttcttcaaaatctaagtattaatgtttcatatccccttttgcag
||||| ||||  | |||   ||||||||||||||  |||  | | | |||   ||||| ||||| ||||||||||||||||| || ||||||||||| ||||| | | | |||  ||| | | ||    |   || | |  |||        |||| ||||   ||   |   | ||    ||||||  |           
GAGGTCTAGCATCTTTTTTGCATTGTGACAACTTTACCAGCTTTCTACCACAAAATGCCAGTGTAAAATGCTTGAGTGATGCTGGATTTTTTCTTGATGAgtaagttctctcttccttaatttatggtgaaccaaatcttgtat--------attttttct---aatgttggattttggcttttcattacag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151413033|gb|EV282841.1|EV282841
EST:     ACGAATGCTAGTGTTAAATGCTTGAGTGATGCCGGNNNNNNNCTTGACGA                         AAGAGATATCAGTTTGAATCATACTATGAGGTATAATTTCAAAAGTCTAGT
genomic: ACGAATGCTAGTGTTAAATGCTTGAGTGATGCCGGTTTTTTTCTTGACGAgtatgatttg ... ccttttgcagAAGAGATATCAGTTTGAATCATACTATGAGGTATAATTTCAAAAGTCTAGT