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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacccttttggttctacgtagtagtacattcataaatcattattttttttccgaccaaattaatgaccatcaccaattaattatttatggtacatgccagGGAGGTGGATGGTGTAATGACTTGAAATCATGCTTGGATAGAGCCAAAACTCGGAGGGGTTCAACACGTTATATGACCAAGTGGGAGGTGTTCTCCGGTA

Basic information

species Glycine max
transcript GLYMA20G29930.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20449680|gb|BQ253804.1|BQ253804
EST:     TGCACAGAGGATTTGGAGCTGGTAAAGACAACTGGCTTCTACAATTTGAG                         GGAGGTGGATGGTGTAATGACTTGAAATCATGCTTGGATAGAGCCAAAACT
genomic: TGCACAGAGGATTTGGAGCTGGTAAAGACAACTGGCTTCTACAATTTGAGgtacgccgaa ... tacatgccagGGAGGTGGATGGTGTAATGACTTGAAATCATGCTTGGATAGAGCCAAAACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttccgaccaaattaatgaccatcaccaattaattatttatggtacatgccagGGAGGTGGATGGTGTAATGACTTGAAATCATGCTTGGATAGAGCCAAAACTCGGAGGGGTTCAACACGTTATATGACCAAGTGGGAGGTGTTCTCCGGTA
                             aattaat  putative branch site (score: 3)
                             aattaattatttatgg  TA-rich tract