1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcgtctctttctttcaatcctgaataatctatttacaagtaagcatgaaaggctaatcataattattatgtctgacaactctagttccatcttgtagcagCAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAGGGATGGTCTTTCGGATCACTCCAAGTCAATTTACACAAGTACTCGTGCTCAT
species | Glycine max |
transcript | GLYMA20G29820.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGCTTGCAGTCAATGGGGCTATCAATAGAA CAGTGGAAGCTCGAAGAGAGCEST: gi|11689795|gb|BF597471.1|BF597471
genomic: GTGCTTGCAGTCAATGGGGCTATCAATAGAAgtaagtcttt ... cttgtagcagCAGTGGAAGCTCGAAGAGAGC
EST: GTTGCTTGCAGTCAATGGGGCTATCAATAGAA CAGCAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAGEST: gi|51343595|gb|CO984328.1|CO984328
genomic: GT-GCTTGCAGTCAATGGGGCTATCAATAGAAgtaagtcttt ... cttgtagcagCAG---TGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAG
EST: GTGCTTGCAGTCAATGGGGCTATCAATAGAA CAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAGGGAEST: gi|193479708|gb|FK448189.1|FK448189
genomic: GTGCTTGCAGTCAATGGGGCTATCAATAGAAgtaagtcttt ... cttgtagcagCAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAGGGA
EST: GTGCTTGCAGTCAATGGGGCTATCAATAGAA CAGTGGAAGCTCGAAGAGAGCEST: gi|193528423|gb|FK483953.1|FK483953
genomic: GTGCTTGCAGTCAATGGGGCTATCAATAGAAgtaagtcttt ... cttgtagcagCAGTGGAAGCTCGAAGAGAGC
EST: GTGCTTGCAGTCAATGGGGCTATCAATAGAA CAGTGGAAGCTCGAAGAGAGCEST: gi|208326330|gb|GE120712.1|GE120712
genomic: GTGCTTGCAGTCAATGGGGCTATCAATAGAAgtaagtcttt ... cttgtagcagCAGTGGAAGCTCGAAGAGAGC
EST: GTGCTTGCAGTCAATGGGGCTATCAATAGAA CAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAGGGA
genomic: GTGCTTGCAGTCAATGGGGCTATCAATAGAAgtaagtcttt ... cttgtagcagCAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAGGGA
tgaaaggctaatcataattattatgtctgacaactctagttccatcttgtagcagCAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAGGGATGGTCTTTCGGATCACTCCAAGTCAATTTACACAAGTACTCGTGCTCAT
gtctgac putative branch site (score: 3)
ttccatctt putative PPT
taatcataattattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgtctctttctttcaatcctgaataatctatttacaagtaagcatgaaaggctaatcataattattatgtctgacaactctagttccatcttgtagcagCAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAGGGATGGTCTTTCGGATCACTCCAAGTCAATTTACACAAGTACTCGTGCTCAT
- - - - - - - - -tcctgaa
- - - - - - - - - - - - - - - - - - - - - gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgaca