1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGGGAGGAAGGTTTGCTAAGTGCTTACTCTGTTATGGACATGGACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgtttttttttctttctattattttgattttaaagaattgtcacattggtttttattttttcctggaacctttgtatatgtattgatacttttgattcgttatcctagctttttcccagttatgctaagcctaatcttttcatacaatttgtattccttag
species | Glycine max |
transcript | GLYMA20G29820.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAG GTGCTTGCAGTCAATGGGGCTATCAATAGAAEST: gi|11689795|gb|BF597471.1|BF597471
genomic: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGTGCTTGCAGTCAATGGGGCTATCAATAGAA
EST: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAG GTTGCTTGCAGTCAATGGGGCTATCAATAGAAEST: gi|51343595|gb|CO984328.1|CO984328
genomic: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGT-GCTTGCAGTCAATGGGGCTATCAATAGAA
EST: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAG GTGCTTGCAGTCAATGGGGCTATCAATAGAAEST: gi|193479708|gb|FK448189.1|FK448189
genomic: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGTGCTTGCAGTCAATGGGGCTATCAATAGAA
EST: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAG GTGCTTGCAGTCAATGGGGCTATCAATAGAAEST: gi|193528423|gb|FK483953.1|FK483953
genomic: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGTGCTTGCAGTCAATGGGGCTATCAATAGAA
EST: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAG GTGCTTGCAGTCAATGGGGCTATCAATAGAAEST: gi|207783914|gb|GD756894.1|GD756894
genomic: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGTGCTTGCAGTCAATGGGGCTATCAATAGAA
EST: ACACTTCAGCTATAACTGTCCTCAAAAATGGTCATGGAATTGATCCAAAG GTGACTTGCAGTCAAEST: gi|208326330|gb|GE120712.1|GE120712
genomic: ACACTTCAGCTATAACTGTCCTCAAAA-TGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGTG-CTTGCAGTCAA
EST: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAG GTGCTTGCAGTCAATGGGGCTATCAATAGAA
genomic: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGTGCTTGCAGTCAATGGGGCTATCAATAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGAGGAAGGTTTGCTAAGTGCTTACTCTGTTATGGACATGGACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgtttttttttctttctattattttgattttaaagaattgtcacattggtttttattttttcctggaacctttgtatatgtattgatacttttgattcgttatcctagctttttcccagttatgctaagcctaatcttttcatacaatttgtattccttag
- - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA