1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCAAAAAATGAAGGGTTAGAATCTGAGAAACACAATGCTGATCGAATTGCAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGgtatgtagcaagattcatagatttattatttttagtggttgtattatatgttgctgtgatctttaaaaatcattagcggttcctaagaaacagtgtttttctgtttttttgagattgatacaaattgaattttcccatagtagtgtataaatggtaatttggtatttccag
species | Glycine max |
transcript | GLYMA20G29820.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATG GGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGACEST: gi|21887197|gb|BQ740410.1|BQ740410
genomic: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGgtatgtagca ... gtatttccagGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
EST: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATG GGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGACEST: gi|193564368|gb|FK519217.1|FK519217
genomic: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGgtatgtagca ... gtatttccagGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
EST: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATG GGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGACEST: gi|193328999|gb|FK295243.1|FK295243
genomic: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGgtatgtagca ... gtatttccagGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
EST: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATG GGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGACEST: gi|24205727|gb|BU964980.1|BU964980
genomic: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGgtatgtagca ... gtatttccagGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
EST: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATG GGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
genomic: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGgtatgtagca ... gtatttccagGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAAAAAATGAAGGGTTAGAATCTGAGAAACACAATGCTGATCGAATTGCAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGgtatgtagcaagattcatagatttattatttttagtggttgtattatatgttgctgtgatctttaaaaatcattagcggttcctaagaaacagtgtttttctgtttttttgagattgatacaaattgaattttcccatagtagtgtataaatggtaatttggtatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG