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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagcaagattcatagatttattatttttagtggttgtattatatgttgctgtgatctttaaaaatcattagcggttcctaagaaacagtgtttttctgtttttttgagattgatacaaattgaattttcccatagtagtgtataaatggtaatttggtatttccagGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGACACTCTCAGAGTGACTAAATCCCCCTTTAAACATCATGGTGAAAGTTCCT

Basic information

species Glycine max
transcript GLYMA20G29820.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343595|gb|CO984328.1|CO984328
EST:     CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATG                         GGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
genomic: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGgtatgtagca ... gtatttccagGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
EST: gi|21887197|gb|BQ740410.1|BQ740410
EST:     CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATG                         GGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
genomic: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGgtatgtagca ... gtatttccagGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
EST: gi|193564368|gb|FK519217.1|FK519217
EST:     CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATG                         GGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
genomic: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGgtatgtagca ... gtatttccagGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
EST: gi|193328999|gb|FK295243.1|FK295243
EST:     CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATG                         GGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
genomic: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGgtatgtagca ... gtatttccagGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
EST: gi|24205727|gb|BU964980.1|BU964980
EST:     CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATG                         GGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC
genomic: CAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGgtatgtagca ... gtatttccagGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatacaaattgaattttcccatagtagtgtataaatggtaatttggtatttccagGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGACACTCTCAGAGTGACTAAATCCCCCTTTAAACATCATGGTGAAAGTTCCT
 gattgat  putative branch site (score: 4)
                                              tatttcc  putative PPT
                             tataaatggtaattt  TA-rich tract