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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGGTGAGTGTGTAGCAATCTGGTGGAGGCCAAATTTTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtgaagacaatgccattaaatatcttgcattcctggcttccttggtcagttggtccatgcttacaataataccattgaatatcttgtgtgcag

Basic information

species Glycine max
transcript GLYMA20G29700.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397058|gb|EV266931.1|EV266931
EST:     TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|13790631|gb|BG653222.1|BG653222
EST:     TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|6725513|gb|AW309912.1|AW309912
EST:     CCTCCTCATAT-ACCAAACCCAAG                         GAGTGC-AAAAGCTTTTCCTTGTTCATTTATCTGAGACGGAATACTTTGCA
genomic: CCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|21257002|gb|BQ453890.1|BQ453890
EST:     TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|14259587|gb|BG882495.1|BG882495
EST:     TTGAAACCATAATGTATCCATACTGCCCTNCTCATATAACAAAACCCAAG                         GAGTGCAAAAAG
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAG
EST: gi|209717384|gb|BW659060.1|BW659060
EST:     TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|6951737|gb|AW423805.1|AW423805
EST:     CCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
genomic: CCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|9820239|gb|BE555749.1|BE555749
EST:     TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|192324565|gb|FK016456.1|FK016456
EST:     TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|151401044|gb|EV270858.1|EV270858
EST:     TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAT                         GAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|21257121|gb|BQ454009.1|BQ454009
EST:     TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|58021934|gb|CX708675.1|CX708675
EST:     TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|192301040|gb|FG988925.1|FG988925
EST:     TTGAAAC-ATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|298196118|gb|HO044509.1|HO044509
EST:     TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGCTTTTCCTTGTTCATTTATCTGAGAGGGAATACTTTGCA
EST: gi|9899569|gb|BE608537.1|BE608537
EST:     TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAG
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAG
EST: gi|6566129|gb|AW233768.1|AW233768
EST:     TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAG                         GAGTGCAAAAAGC
genomic: TTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtg ... ttgtgtgcagGAGTGCAAAAAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAGGTGAGTGTGTAGCAATCTGGTGGAGGCCAAATTTTGAAACCATAATGTATCCATACTGCCCTCCTCATATAACAAAACCCAAGgtaacttgtgaagacaatgccattaaatatcttgcattcctggcttccttggtcagttggtccatgcttacaataataccattgaatatcttgtgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC