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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATACGTACCCGTTGTCGAGCTACACGTTCGGCACGAAGGAGCCCAAGATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatccaatctcctctttcttcttcttttccaaaccctagactagaacacccccccccccccctcccctccccccgtacttttttctcttgcaaac...

Basic information

species Glycine max
transcript GLYMA20G29700.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193566914|gb|FK523811.1|FK523811
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGT
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGT
EST: gi|207800796|gb|GD775983.1|GD775983
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|151397058|gb|EV266931.1|EV266931
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGCCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|193673067|gb|FK618929.1|FK618929
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGT
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGT
EST: gi|21257002|gb|BQ453890.1|BQ453890
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|14259587|gb|BG882495.1|BG882495
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|209717384|gb|BW659060.1|BW659060
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|9820239|gb|BE555749.1|BE555749
EST:     AGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: AGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|192324565|gb|FK016456.1|FK016456
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|151401044|gb|EV270858.1|EV270858
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|21257121|gb|BQ454009.1|BQ454009
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|58021934|gb|CX708675.1|CX708675
EST:     TCGCTCGCATGAAAGTTCAA                         CTATATGAAGGAGGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: TCGCTCGCATGAAAG-TCAAgtacgtatcc ... tttgtttcagCTATATGAAGGA-GGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|192301040|gb|FG988925.1|FG988925
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|298196118|gb|HO044509.1|HO044509
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|9899569|gb|BE608537.1|BE608537
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|207707132|gb|GD687624.1|GD687624
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
EST: gi|6566129|gb|AW233768.1|AW233768
EST:     ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAA                         CTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG
genomic: ATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatcc ... tttgtttcagCTATATGAAGGAGGGAATGAGGACCAGTGTGGAAGGAATTTTACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAATACGTACCCGTTGTCGAGCTACACGTTCGGCACGAAGGAGCCCAAGATGGAGAAGGATACCTCCGTCGCGGATCGTCTCGCTCGCATGAAAGTCAAgtacgtatccaatctcctctttcttcttcttttccaaaccctagactagaacacccccccccccccctcccctccccccgtacttttttctcttgcaaac

- - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc