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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAAGAGCACAATCATCCTCATATACTTCTTCTGCAAATTGGAAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatcttgcttattttttctgaatataatagtctgaaaatagcagctcgtgattatcttaatgtacatttttgtggggttatatgatgtttacag

Basic information

species Glycine max
transcript GLYMA20G29700.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207800796|gb|GD775983.1|GD775983
EST:     AAACACATTCTGCAAACTCCCAGGCGGTCGTCTCAAACCAGGAGAGAATG                         AAATTGAGGGCTTGAAGAGGAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|151397058|gb|EV266931.1|EV266931
EST:     AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATG                         AAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|21257002|gb|BQ453890.1|BQ453890
EST:     AAACACATTCTGCAAACTCCCAGGCGGTCGTCTCAAACCAGGAGAGAATG                         AAATTGAGGGCTTGAAGAGGAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|14259587|gb|BG882495.1|BG882495
EST:     AAACACATTCTGCAAACTCCCAGGCGGTCGTCTCAAACCAGGAGAGAATG                         AAATTGAGGGCTTGAAGAGGAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|209717384|gb|BW659060.1|BW659060
EST:     AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATG                         AAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|9820239|gb|BE555749.1|BE555749
EST:     AAACACATTCTGCAAACTCCCAGGCGGTCGTCTCAAACCAGGAGAGAATG                         AAATTGAGGGCTTGAAGAGGAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|192324565|gb|FK016456.1|FK016456
EST:     AAACACATTCTACAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATG                         AAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCGC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|151401044|gb|EV270858.1|EV270858
EST:     AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATG                         AAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|21257121|gb|BQ454009.1|BQ454009
EST:     AAACACATTCTGCAAACTCCCAGGCGGTCGTCTCAAACCAGGAGAGAATG                         AAATTGAGGGCTTGAAGAGGAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|58021934|gb|CX708675.1|CX708675
EST:     AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATG                         AAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|192301040|gb|FG988925.1|FG988925
EST:     AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATG                         AAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|298196118|gb|HO044509.1|HO044509
EST:     AAACACATTCTGCAAACTCCCAGGCGGTCGTCTCAAACCAGGAGAGAATG                         AAATTGAGGGCTTGAAGAGGAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|9899569|gb|BE608537.1|BE608537
EST:     AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATG                         AAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|207707132|gb|GD687624.1|GD687624
EST:     AAACACATTCTGCAAACTCCCAGGCGGTCGTCTCAAACCAGGAGAGAATG                         AAATTGAGGGCTTGAAGAGGAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
EST: gi|6566129|gb|AW233768.1|AW233768
EST:     AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATG                         AAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC
genomic: AAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatctt ... atgtttacagAAAATGAGGGCTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACAAGAGCACAATCATCCTCATATACTTCTTCTGCAAATTGGAAACACATTCTGCAAACTCCCAGGTGGTCGTCTCAAACCAGGAGAGAATGgtaagatcttgcttattttttctgaatataatagtctgaaaatagcagctcgtgattatcttaatgtacatttttgtggggttatatgatgtttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA