Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaactttttgttttctttgcagtttgatactttttttcttgtaaagttcatttgagctcattgtgagtatttcattgtcaaacttgttatgcca...

Basic information

species Glycine max
transcript GLYMA20G29520.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29520.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G04630.1 (Arabidopsis thaliana), 5'ss of exon 4
TATGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaactttttgttttctttgcagtttgatactttttttcttgtaaagttcatttgagctcat---tgtgagtatttcattgtcaaacttgttatgcca
 |||||||| ||||| ||||| ||||||||||| || ||||| ||||| |||||       ||| ||  ||  | |   ||||   |   ||| ||    || ||| || ||          | || ||  || |||||   | |||   |    
CATGAATGCTCCTGTTATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAGgtgttgc--cttcttccttcttgttgtgtttttcatgatttgtcagtaaatgttgatatgtatatgaacatttgtgttgtttattgtatgatttggcttaag-

upper sequence: GLYMA20G29520.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0028g01210.t01 (Vitis vinifera), 5'ss of exon 4
TATGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaactttttgttttctttgcagtttgatactttttttcttgtaaagttcatttgagctcattgtgagtatttcattgtcaaacttgttatgcca----
 |||||||| ||||| ||||| ||||||||||| || ||||||||||| ||||||  |    | |||||    | ||| | |  | | |||| || ||   |   | ||   |   || |||   |  | |||  | | |    | |   ||    
CATGAATGCGCCTGTGATGGTTGAGTTGGAGGGTGAGACTGACCCACTTGAGgtatgaa---tctttgtgaggtatgctggtctagaattttattttttccactctaatagtattccagtgtctttggt-catgctaatatgactcagttcaagta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165231|gb|HO011280.1|HO011280
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|7685783|gb|AW756431.1|AW756431
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|38191064|gb|CF920270.1|CF920270
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298192991|gb|HO033436.1|HO033436
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|254336740|gb|GR842919.1|GR842919
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|207698395|gb|GD681362.1|GD681362
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298173744|gb|HO017080.1|HO017080
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|38191210|gb|CF920416.1|CF920416
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|58022483|gb|CX709224.1|CX709224
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298172249|gb|HO021841.1|HO021841
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|192330280|gb|FK020565.1|FK020565
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGGGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298192831|gb|HO033265.1|HO033265
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|254349274|gb|GR860072.1|GR860072
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298187281|gb|HO034430.1|HO034430
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|33390389|gb|CA853584.1|CA853584
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298180267|gb|HO025482.1|HO025482
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|4292073|gb|AI437710.1|AI437710
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGG-AACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|18041372|gb|BM309666.1|BM309666
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298176538|gb|HO023125.1|HO023125
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|7030218|gb|AW460001.1|AW460001
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|22525102|gb|BU083913.1|BU083913
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|26059945|gb|CA802859.1|CA802859
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298189619|gb|HO038022.1|HO038022
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298183161|gb|HO028424.1|HO028424
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298195170|gb|HO043698.1|HO043698
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         GTTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298191022|gb|HO038501.1|HO038501
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298170215|gb|HO018839.1|HO018839
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|207754971|gb|GD727382.1|GD727382
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|7028475|gb|AW458258.1|AW458258
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|5058436|gb|AI736968.1|AI736968
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACT-ACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|208304736|gb|GE106119.1|GE106119
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTC
EST: gi|208170776|gb|GD970109.1|GD970109
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298188651|gb|HO035344.1|HO035344
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAGATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|207783421|gb|GD758809.1|GD758809
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298172659|gb|HO019699.1|HO019699
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGATCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|193717210|gb|FK650820.1|FK650820
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298180194|gb|HO025409.1|HO025409
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298191930|gb|HO036012.1|HO036012
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|33390640|gb|CA853835.1|CA853835
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|209698191|gb|BW667522.1|BW667522
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|254344406|gb|GR855384.1|GR855384
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298184470|gb|HO029683.1|HO029683
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298177192|gb|HO023439.1|HO023439
EST:     TGAATGCACCTGTCATGGTCAAGTTGGAGGGGGAAACTGACCCACTCGAG                         ACTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298166756|gb|HO010195.1|HO010195
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298171230|gb|HO016262.1|HO016262
EST:     TGAATGCACCTGTCATGATCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298176336|gb|HO023037.1|HO023037
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGGG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|254344407|gb|GR855385.1|GR855385
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|209698192|gb|BW667523.1|BW667523
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298170941|gb|HO015917.1|HO015917
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|37994303|gb|CF806049.1|CF806049
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|58022241|gb|CX708982.1|CX708982
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|208207288|gb|GE002141.1|GE002141
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTAACAATTCGGCG
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTA-CAATTCGGCG
EST: gi|18041270|gb|BM309564.1|BM309564
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298196895|gb|HO041638.1|HO041638
EST:     TGAATGCGCCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|254345389|gb|GR851658.1|GR851658
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298180584|gb|HO025671.1|HO025671
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|151407312|gb|EV277127.1|EV277127
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|151394797|gb|EV264668.1|EV264668
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|207835901|gb|GD806010.1|GD806010
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTAGACTAATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGG
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATT-G-CTA-TGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGG
EST: gi|23729847|gb|BU763028.1|BU763028
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298164321|gb|HO013966.1|HO013966
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACGCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298171491|gb|HO016523.1|HO016523
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298175557|gb|HO018268.1|HO018268
EST:     CGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|151405939|gb|EV275754.1|EV275754
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298183150|gb|HO028413.1|HO028413
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|33390649|gb|CA853844.1|CA853844
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|7042587|gb|AW472481.1|AW472481
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|254345390|gb|GR851659.1|GR851659
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|151397944|gb|EV267817.1|EV267817
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298194651|gb|HO043123.1|HO043123
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298179317|gb|HO027788.1|HO027788
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|21675238|gb|BQ627589.1|BQ627589
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|9440517|gb|BE441020.1|BE441020
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATTAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|33387970|gb|CA851177.1|CA851177
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298182798|gb|HO031533.1|HO031533
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|17998851|gb|BI273688.1|BI273688
EST:     TGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
EST: gi|298196040|gb|HO044431.1|HO044431
EST:     TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAG                         ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC
genomic: TGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaac ... aacttatcagATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaactttttgttttctttgcagtttgatactttttttcttgtaaagttcatttgagctcattgtgagtatttcattgtcaaacttgttatgcca

- - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - TGGAGG