Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcagaactctttgtcttgtgtcctttttttgtatctacacaaatgcatgttattgaactctgcgttgaatgaagtaattgaattattgactgctggattgattgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAGCCTATTGACACCGAGGATAAGGAAGAGGAACAACCAGTGAAGCGGCCTC

Basic information

species Glycine max
transcript GLYMA20G29520.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165231|gb|HO011280.1|HO011280
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|7685783|gb|AW756431.1|AW756431
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|38191064|gb|CF920270.1|CF920270
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298192991|gb|HO033436.1|HO033436
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|254336740|gb|GR842919.1|GR842919
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298173744|gb|HO017080.1|HO017080
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|38191210|gb|CF920416.1|CF920416
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298172249|gb|HO021841.1|HO021841
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|193427099|gb|FK397098.1|FK397098
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|192330280|gb|FK020565.1|FK020565
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298192831|gb|HO033265.1|HO033265
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298187281|gb|HO034430.1|HO034430
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|33390389|gb|CA853584.1|CA853584
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298180267|gb|HO025482.1|HO025482
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|18041372|gb|BM309666.1|BM309666
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298176538|gb|HO023125.1|HO023125
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|7030218|gb|AW460001.1|AW460001
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|26059945|gb|CA802859.1|CA802859
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298189619|gb|HO038022.1|HO038022
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298183161|gb|HO028424.1|HO028424
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298195170|gb|HO043698.1|HO043698
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298191022|gb|HO038501.1|HO038501
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298170215|gb|HO018839.1|HO018839
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|7028475|gb|AW458258.1|AW458258
EST:     GTACGAAGATGAACCGCCACAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|208304736|gb|GE106119.1|GE106119
EST:     CCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: CCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298188651|gb|HO035344.1|HO035344
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298172659|gb|HO019699.1|HO019699
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAT                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298180194|gb|HO025409.1|HO025409
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298191930|gb|HO036012.1|HO036012
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|33390640|gb|CA853835.1|CA853835
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|209698191|gb|BW667522.1|BW667522
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|254344406|gb|GR855384.1|GR855384
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298184470|gb|HO029683.1|HO029683
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298177192|gb|HO023439.1|HO023439
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAGAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298166756|gb|HO010195.1|HO010195
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298171230|gb|HO016262.1|HO016262
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298176336|gb|HO023037.1|HO023037
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|254344407|gb|GR855385.1|GR855385
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298170941|gb|HO015917.1|HO015917
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|208292814|gb|GE095602.1|GE095602
EST:     TGGGGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: TGGGGTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|37994303|gb|CF806049.1|CF806049
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|18041270|gb|BM309564.1|BM309564
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298196895|gb|HO041638.1|HO041638
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|254345389|gb|GR851658.1|GR851658
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298180584|gb|HO025671.1|HO025671
EST:     GTACGAAGATGGACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|151407312|gb|EV277127.1|EV277127
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|151394797|gb|EV264668.1|EV264668
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAGGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|23729847|gb|BU763028.1|BU763028
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298164321|gb|HO013966.1|HO013966
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298171491|gb|HO016523.1|HO016523
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298175557|gb|HO018268.1|HO018268
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|151405939|gb|EV275754.1|EV275754
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298183150|gb|HO028413.1|HO028413
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|33390649|gb|CA853844.1|CA853844
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|7042587|gb|AW472481.1|AW472481
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|254345390|gb|GR851659.1|GR851659
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|151397944|gb|EV267817.1|EV267817
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298194651|gb|HO043123.1|HO043123
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACAGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298179317|gb|HO027788.1|HO027788
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGGGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|21675238|gb|BQ627589.1|BQ627589
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|33387970|gb|CA851177.1|CA851177
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298182798|gb|HO031533.1|HO031533
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
EST: gi|298196040|gb|HO044431.1|HO044431
EST:     GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG                         GAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG
genomic: GTACGAAGATGAACCGCCAGAGCCCGAGATTGAGgtgcagaact ... tgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctgcgttgaatgaagtaattgaattattgactgctggattgattgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAGCCTATTGACACCGAGGATAAGGAAGAGGAACAACCAGTGAAGCGGCCTC
              aagtaattgaattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtgcagaactctttgtcttgtgtcctttttttgtatctacacaaatgcatgttattgaactctgcgttgaatgaagtaattgaattattgactgctggattgattgatgaacagGAAGGTGCAGAGGAAGATGTGGAGAACAAAAACGATGAAATAACTGGAGAGCCTATTGACACCGAGGATAAGGAAGAGGAACAACCAGTGAAGCGGCCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC