Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattcttcatgcttcaattgctagggttagagccctgaattctgtaatctgtatattttcattgaatggtttctcatggaataaagggtggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG

Basic information

species Glycine max
transcript GLYMA20G29520.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165231|gb|HO011280.1|HO011280
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|7685783|gb|AW756431.1|AW756431
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|38191064|gb|CF920270.1|CF920270
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298192991|gb|HO033436.1|HO033436
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|254336740|gb|GR842919.1|GR842919
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298173744|gb|HO017080.1|HO017080
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|38191210|gb|CF920416.1|CF920416
EST:     CGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: CGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298172249|gb|HO021841.1|HO021841
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|193427099|gb|FK397098.1|FK397098
EST:     ACTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: -CTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|192330280|gb|FK020565.1|FK020565
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298192831|gb|HO033265.1|HO033265
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298187281|gb|HO034430.1|HO034430
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|33390389|gb|CA853584.1|CA853584
EST:     TCTCTGCGATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298180267|gb|HO025482.1|HO025482
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|18041372|gb|BM309666.1|BM309666
EST:     CTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: CTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298176538|gb|HO023125.1|HO023125
EST:     TCTCTGCAATTCGCGATGGCAGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|7030218|gb|AW460001.1|AW460001
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|26059945|gb|CA802859.1|CA802859
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298189619|gb|HO038022.1|HO038022
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298183161|gb|HO028424.1|HO028424
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298195170|gb|HO043698.1|HO043698
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298191022|gb|HO038501.1|HO038501
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298170215|gb|HO018839.1|HO018839
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|7028475|gb|AW458258.1|AW458258
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCACAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298188651|gb|HO035344.1|HO035344
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298172659|gb|HO019699.1|HO019699
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAT
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298180194|gb|HO025409.1|HO025409
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298191930|gb|HO036012.1|HO036012
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|33390640|gb|CA853835.1|CA853835
EST:     ATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: ATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|209698191|gb|BW667522.1|BW667522
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|254344406|gb|GR855384.1|GR855384
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298184470|gb|HO029683.1|HO029683
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298177192|gb|HO023439.1|HO023439
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298166756|gb|HO010195.1|HO010195
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298171230|gb|HO016262.1|HO016262
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298176336|gb|HO023037.1|HO023037
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|254344407|gb|GR855385.1|GR855385
EST:     ATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: ATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298170941|gb|HO015917.1|HO015917
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|37994303|gb|CF806049.1|CF806049
EST:     GATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: GATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|18041270|gb|BM309564.1|BM309564
EST:     CTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: CTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298196895|gb|HO041638.1|HO041638
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|254345389|gb|GR851658.1|GR851658
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298180584|gb|HO025671.1|HO025671
EST:     TCTCTGTAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGGACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|151407312|gb|EV277127.1|EV277127
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|151394797|gb|EV264668.1|EV264668
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|23729847|gb|BU763028.1|BU763028
EST:     GGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: GGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298164321|gb|HO013966.1|HO013966
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298171491|gb|HO016523.1|HO016523
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298175557|gb|HO018268.1|HO018268
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACCATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|151405939|gb|EV275754.1|EV275754
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298183150|gb|HO028413.1|HO028413
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|33390649|gb|CA853844.1|CA853844
EST:     TCTCTGCGATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|7042587|gb|AW472481.1|AW472481
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|254345390|gb|GR851659.1|GR851659
EST:     TGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|151397944|gb|EV267817.1|EV267817
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298194651|gb|HO043123.1|HO043123
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298179317|gb|HO027788.1|HO027788
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|21675238|gb|BQ627589.1|BQ627589
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|33387970|gb|CA851177.1|CA851177
EST:     TCTCTGCGATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298182798|gb|HO031533.1|HO031533
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
EST: gi|298196040|gb|HO044431.1|HO044431
EST:     TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGG                         GTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
genomic: TCTCTGCAATTCGCGATGGCTGACGAGGACTATGAAGATATTGACATGGGgttcgttctc ... ggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatctgtatattttcattgaatggtttctcatggaataaagggtggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG
       tatattttcattgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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ttattcttcatgcttcaattgctagggttagagccctgaattctgtaatctgtatattttcattgaatggtttctcatggaataaagggtggtgatgcagGTACGAAGATGAACCGCCAGAGCCCGAGATTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - -tcatgct
- - - - - - - -caattgc
- - - - - - - - - - - - - - - - -ccctgaa
- - - - - - - - - - - - - - - - - - - - ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggaa