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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAGAGAGCAGTAACTCTCAGTTTGCTCGGCTGGAGGAATTAAAAAGAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTTATCATgtaggttttttctcactgtattcatcattatcagatctatttagttagtggtggcttctaaggtacgcccctaattcttgggtgaatatgctgcttagca...

Basic information

species Glycine max
transcript GLYMA20G29280.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6455809|gb|AW186492.1|AW186492
EST:     GAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTTATCAT                         GATGGAAGATCAGGAGCGTCTTCTCA
genomic: GAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTTATCATgtaggttttt ... attatgttagGATGGAAGATCAGGAGCGTCTTCTCA
EST: gi|6727086|gb|AW311440.1|AW311440
EST:     GAAGATTGGAAGCTCTGAATCCAACTCGTGCATCAACTAATCTNTATCAT                         GATGGAAGATCAGGAGCGTCTTCTCA
genomic: GAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTTATCATgtaggttttt ... attatgttagGATGGAAGATCAGGAGCGTCTTCTCA
EST: gi|13478740|gb|BG508094.1|BG508094
EST:     GAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTTATCAT                         GATGGAAGATCAGGAGCGTCTTCTCAGGATAGTACACCCCAACCTGGTTCC
genomic: GAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTTATCATgtaggttttt ... attatgttagGATGGAAGATCAGGAGCGTCTTCTCAGGATAGTACACCCCAACCTGGTTCC
EST: gi|31470456|gb|CD412484.1|CD412484
EST:     GAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTNATCAT                         GATGGAAGATCAGGAGCGTCTTCTCAGGATAGTACACCCCAACCTGGTTCC
genomic: GAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTTATCATgtaggttttt ... attatgttagGATGGAAGATCAGGAGCGTCTTCTCAGGATAGTACACCCCAACCTGGTTCC
EST: gi|208138888|gb|GD934672.1|GD934672
EST:     GAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTTATCAT                         GATGGAAGATCAGGAGCGTCTTCTCAGGATAGTACACCCCAACCTGGTTCC
genomic: GAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTTATCATgtaggttttt ... attatgttagGATGGAAGATCAGGAGCGTCTTCTCAGGATAGTACACCCCAACCTGGTTCC
EST: gi|151398262|gb|EV268140.1|EV268140
EST:     GAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTTATCAT                         GATGGAAGATCAGGAGCGTCTTCTCAGGATAGTACACCCCAACCTGGTTCC
genomic: GAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTTATCATgtaggttttt ... attatgttagGATGGAAGATCAGGAGCGTCTTCTCAGGATAGTACACCCCAACCTGGTTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCAAGAGAGCAGTAACTCTCAGTTTGCTCGGCTGGAGGAATTAAAAAGAAGATTGGAAGCTTTGAATCCAACTCGTGCATCAACTAATCTTTATCATgtaggttttttctcactgtattcatcattatcagatctatttagttagtggtggcttctaaggtacgcccctaattcttgggtgaatatgctgcttagca

- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgggtg