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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttctctccgtcgccgttttcgtttcgctttgtcattacatactggattgattcttttttttttcttcttcttctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA

Basic information

species Glycine max
transcript GLYMA20G29280.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6455809|gb|AW186492.1|AW186492
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
EST: gi|6727086|gb|AW311440.1|AW311440
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
EST: gi|298198667|gb|HO042030.1|HO042030
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
EST: gi|213618278|gb|DB973048.1|DB973048
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
EST: gi|7589567|gb|AW705338.1|AW705338
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
EST: gi|213602217|gb|DB958477.1|DB958477
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
EST: gi|151398262|gb|EV268140.1|EV268140
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGCCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtcattacatactggattgattcttttttttttcttcttcttctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
                 gattgat  putative branch site (score: 4)
                   ttgattcttttttttt  CT-rich tract
                  attgattctttttttt  TA-rich tract