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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATCGAAGCAGAACAGCTTCAATTGCAGAAgtaacttctttctctttttctcttcattcggatctgagaatgactttgtttttattatgcggttgcacttgcagcattgtttggatttagtttatttcat...

Basic information

species Glycine max
transcript GLYMA20G29280.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6455809|gb|AW186492.1|AW186492
EST:     ATCATCGAAGCAGAACAGCTTCAATTGCAGAA                         ATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCTTGC
genomic: ATCATCGAAGCAGAACAGCTTCAATTGCAGAAgtaacttctt ... ttattttcagATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCTTGC
EST: gi|6727086|gb|AW311440.1|AW311440
EST:     ATCATCGAAGCAGAACAGCTTCAATTGCAGAA                         ATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCTTGC
genomic: ATCATCGAAGCAGAACAGCTTCAATTGCAGAAgtaacttctt ... ttattttcagATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCTTGC
EST: gi|298198667|gb|HO042030.1|HO042030
EST:     ATCATCGAAGCAGAACAGCTTCAATTGCAGAA                         ATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCTTGC
genomic: ATCATCGAAGCAGAACAGCTTCAATTGCAGAAgtaacttctt ... ttattttcagATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCTTGC
EST: gi|213618278|gb|DB973048.1|DB973048
EST:     ATCATCGAAGCAGAACAGCTTCAATTGCAGAA                         ATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCTTGC
genomic: ATCATCGAAGCAGAACAGCTTCAATTGCAGAAgtaacttctt ... ttattttcagATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCTTGC
EST: gi|7589567|gb|AW705338.1|AW705338
EST:     ATCATCGAAGCAGAACAGCTTCAATTGCAGAA                         ATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCT
genomic: ATCATCGAAGCAGAACAGCTTCAATTGCAGAAgtaacttctt ... ttattttcagATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCT
EST: gi|213602217|gb|DB958477.1|DB958477
EST:     ATCATCGAAGCAGAACAGCTTCAATTGCAGAA                         ATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCTTGC
genomic: ATCATCGAAGCAGAACAGCTTCAATTGCAGAAgtaacttctt ... ttattttcagATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCTTGC
EST: gi|151398262|gb|EV268140.1|EV268140
EST:     ATCATCGAAGCAGAACAGCTTCAATTGCAGAA                         ATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCTTGC
genomic: ATCATCGAAGCAGAACAGCTTCAATTGCAGAAgtaacttctt ... ttattttcagATACATTCAAGAAAACTATTCTAAAATTCGCAATGTGGAGCGTGAGCTTGC