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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATCGGATTCCGAAATGGCTTCGAACCCTTCGCTTCTCCCTGAGATCGGACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctctccgtcgccgttttcgtttcgctttgtcattacatactggattgattcttttttttttcttcttcttctcgtttcag

Basic information

species Glycine max
transcript GLYMA20G29280.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6455809|gb|AW186492.1|AW186492
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
EST: gi|6727086|gb|AW311440.1|AW311440
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
EST: gi|298198667|gb|HO042030.1|HO042030
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
EST: gi|213618278|gb|DB973048.1|DB973048
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
EST: gi|7589567|gb|AW705338.1|AW705338
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
EST: gi|213602217|gb|DB958477.1|DB958477
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA
EST: gi|151398262|gb|EV268140.1|EV268140
EST:     GACCCGATGGTCTCGCTAAAGAAGCTCCCGCCATCGGCTACACCGAGAAG                         ATCATCGAAGCAGAACAGCTTCAATTGCAGAA
genomic: GACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctc ... ctcgtttcagATCATCGAAGCAGAACAGCTTCAATTGCAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGATCGGATTCCGAAATGGCTTCGAACCCTTCGCTTCTCCCTGAGATCGGACCCGATGGTCTCGCTAAAGAAGCTCCCGTCATCGGCTACACCGAGAAGgttcgttctctccgtcgccgttttcgtttcgctttgtcattacatactggattgattcttttttttttcttcttcttctcgtttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC