Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCAGCAGCTTATCCATTTGTCGTCAACGCTACCTCAAACCTCAATTTCCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactatacatacactgttactgctttttttgcatgtgaaacattagctgatttggttatttatttccaattctttggtgcctgattgaaaatttgaag

Basic information

species Glycine max
transcript GLYMA20G28640.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213614166|gb|DB976371.1|DB976371
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|214005718|gb|DB988671.1|DB988671
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|214005235|gb|DB989144.1|DB989144
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|6915933|gb|AW397463.1|AW397463
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTNCTTGCAG                         GCGAGAAAGACAATGTGGTNAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|5127018|gb|AI748754.1|AI748754
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGGAAGGCAGATAGAAAGACAGGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|213601026|gb|DB983701.1|DB983701
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|209718462|gb|BW666260.1|BW666260
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|214005921|gb|DB988706.1|DB988706
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|209714461|gb|BW684850.1|BW684850
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|209726538|gb|BW658092.1|BW658092
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|209722935|gb|BW668777.1|BW668777
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|213605835|gb|DB983582.1|DB983582
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|209708052|gb|BW657094.1|BW657094
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|214004887|gb|DB989033.1|DB989033
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCCAGCAGCTTATCCATTTGTCGTCAACGCTACCTCAAACCTCAATTTCCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactatacatacactgttactgctttttttgcatgtgaaacattagctgatttggttatttatttccaattctttggtgcctgattgaaaatttgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA