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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTCCAACAACTTTGGAAAGTTCTTTGAGATCACCCCTGAGAAAAACCCACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAAgtaagcataaaattaagaaaaaccatatactcaaactcgtgaactggacaattcagttctattcactctctccttagttagcgaacctaattattcagttctatcaacaaataatgatttcttcttttgttcacaaatatag

Basic information

species Glycine max
transcript GLYMA20G28640.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6915933|gb|AW397463.1|AW397463
EST:     CACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAA                         GGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTG
genomic: CACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAAgtaagcataa ... acaaatatagGGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTG
EST: gi|5342773|gb|AI795057.1|AI795057
EST:     CACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAA                         GGAGCTCTTCTTCTACCACACTTCAATTCANAGGCCATAGTGATACTAGTG
genomic: CACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAAgtaagcataa ... acaaatatagGGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTG
EST: gi|7145659|gb|AW507581.1|AW507581
EST:     CACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAA                         GGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTG
genomic: CACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAAgtaagcataa ... acaaatatagGGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTG
EST: gi|298164587|gb|HO014232.1|HO014232
EST:     CACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAA                         GGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTG
genomic: CACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAAgtaagcataa ... acaaatatagGGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTG
EST: gi|298199439|gb|HO042802.1|HO042802
EST:     CACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAA                         GGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTG
genomic: CACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAAgtaagcataa ... acaaatatagGGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTG
EST: gi|209726538|gb|BW658092.1|BW658092
EST:     CACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAA                         GGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTG
genomic: CACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAAgtaagcataa ... acaaatatagGGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTG