Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAGCTGGAACCACTTACTATTTGGTTAACCCTCACGACCACCAGAATCTCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcacttctctttctctctttatatataacacattcttccattcttcttcttctaattatttatttatttatttccaaaatgtacgtgatgaccatcaattttaatttgtcctttctctctctgtag

Basic information

species Glycine max
transcript GLYMA20G28640.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213598564|gb|DB958148.1|DB958148
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|209721098|gb|BW666359.1|BW666359
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|42723198|gb|CK769097.1|CK769097
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|213597016|gb|DB966339.1|DB966339
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|7146240|gb|AW508094.1|AW508094
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|5342773|gb|AI795057.1|AI795057
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGGTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|6915510|gb|AW397040.1|AW397040
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|5126381|gb|AI748117.1|AI748117
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|6915643|gb|AW397173.1|AW397173
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATGTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|209724177|gb|BW659711.1|BW659711
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|209714460|gb|BW684849.1|BW684849
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|61241574|gb|DN590967.1|DN590967
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|213594890|gb|DB971777.1|DB971777
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|6916308|gb|AW397838.1|AW397838
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATNTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|5057596|gb|AI736072.1|AI736072
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|7232890|gb|AW568242.1|AW568242
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|7147552|gb|AW509474.1|AW509474
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACTTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|7042725|gb|AW472619.1|AW472619
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCTAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|192298683|gb|FG988579.1|FG988579
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|6915594|gb|AW397124.1|AW397124
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|209709049|gb|BW658765.1|BW658765
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
EST: gi|192297000|gb|FG990301.1|FG990301
EST:     TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGAT                         GATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC
genomic: TCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcactt ... ctctctgtagGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCAGCTGGAACCACTTACTATTTGGTTAACCCTCACGACCACCAGAATCTCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATgtatgcacttctctttctctctttatatataacacattcttccattcttcttcttctaattatttatttatttatttccaaaatgtacgtgatgaccatcaattttaatttgtcctttctctctctgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT