1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactatacatacactgttactgctttttttgcatgtgaaacattagctgatttggttatttatttccaattctttggtgcctgattgaaaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGCGTTCCCTGGGTCTGCACAAGATGTTGAGAGGCTATTAAAGAAGCAGAG
species | Glycine max |
transcript | GLYMA20G28640.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGEST: gi|214005718|gb|DB988671.1|DB988671
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGEST: gi|214005235|gb|DB989144.1|DB989144
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGEST: gi|6915933|gb|AW397463.1|AW397463
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTNCTTGCAG GCGAGAAAGACAATGTGGTNAGGCAGATAGAAAGACAAGTGCAGGAGCTTGEST: gi|5127018|gb|AI748754.1|AI748754
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGGAAGGCAGATAGAAAGACAGGTGCAGGAGCTTGEST: gi|213601026|gb|DB983701.1|DB983701
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGEST: gi|209718462|gb|BW666260.1|BW666260
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGEST: gi|214005921|gb|DB988706.1|DB988706
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGEST: gi|209714461|gb|BW684850.1|BW684850
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGEST: gi|209726538|gb|BW658092.1|BW658092
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGEST: gi|209722935|gb|BW668777.1|BW668777
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGEST: gi|213605835|gb|DB983582.1|DB983582
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGEST: gi|209708052|gb|BW657094.1|BW657094
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGEST: gi|214004887|gb|DB989033.1|DB989033
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
tagctgatttggttatttatttccaattctttggtgcctgattgaaaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGCGTTCCCTGGGTCTGCACAAGATGTTGAGAGGCTATTAAAGAAGCAGAG
gcctgat putative branch site (score: 4)
atttggttatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatacatacactgttactgctttttttgcatgtgaaacattagctgatttggttatttatttccaattctttggtgcctgattgaaaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGCGTTCCCTGGGTCTGCACAAGATGTTGAGAGGCTATTAAAGAAGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC