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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGAATTGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAGgtatagtctcttttgtataaagttagttcttcattatatatttatataccatgaaggtaactgactagttaaaaacttaaaatccatgtgcttgctcgagcag

Basic information

species Glycine max
transcript GLYMA20G28340.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28340.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g03200.t01 (Vitis vinifera), 5'ss of exon 4
AAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGAATTGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAGgtatagtctcttttg----tataaagttagttcttcattatatatttatataccatgaaggta--actgactagttaaaa-acttaaaatccatgtgcttgctcgagcag
|||||   | || || ||||| ||||| ||||| ||||||||||| ||| | || || ||||||||| |||| || ||||| ||||||||||| |||||||||   ||  ||||     | |  | ||   || ||    |   ||| | | |  |  | | |   |||| |  |||| | | ||   |||  |    ||          
AAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGAAATACTGAGACATAAGACTGTAGAGAAGGTTGTCATGTGTGACATTGATGAGgtaacctccttttttgctctttttatttcaatcctcgactttcttttctctccttttcatgcattgctgattctttaagatattttctatcattaatttt----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565859|gb|BE475368.1|BE475368
EST:     TGCTTATGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAG                         GAGGTGGTGAATTTCTGCTAATC
genomic: TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAGgtatagtctc ... gctcgagcagGAGGTGGTGAATTTCTGCAAATC
EST: gi|298184543|gb|HO029756.1|HO029756
EST:     TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAG                         GAGGTGGTGAATTTCTGCAAATCGTAC
genomic: TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAGgtatagtctc ... gctcgagcagGAGGTGGTGAATTTCTGCAAATCGTAC
EST: gi|298178935|gb|HO024670.1|HO024670
EST:     TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATGGATGAG                         GAGGTGGTGAATTTCTGCAAATCGTACTTTGTGGTGAACAAGGAAGCATTC
genomic: TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAGgtatagtctc ... gctcgagcagGAGGTGGTGAATTTCTGCAAATCGTACTTTGTGGTGAACAAGGAAGCATTC
EST: gi|298187240|gb|HO034389.1|HO034389
EST:     TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAG                         GAGGTGGTGAATTTCTGCAAATCGTACTTTGTGGTGAACAAGGAAGCATTC
genomic: TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAGgtatagtctc ... gctcgagcagGAGGTGGTGAATTTCTGCAAATCGTACTTTGTGGTGAACAAGGAAGCATTC
EST: gi|15203776|gb|BI426544.1|BI426544
EST:     TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAG                         GAAGTGGTGAATTTCTGCAAATCGTACTTTGTGGTGAACAAGGAAGCATTC
genomic: TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAGgtatagtctc ... gctcgagcagGAGGTGGTGAATTTCTGCAAATCGTACTTTGTGGTGAACAAGGAAGCATTC
EST: gi|8283967|gb|BE021526.1|BE021526
EST:     TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAG                         GAGGTGGTGAATTTCTGCAAATCGTACTTTGTGGTGAACAAGGAAGCATTC
genomic: TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAGgtatagtctc ... gctcgagcagGAGGTGGTGAATTTCTGCAAATCGTACTTTGTGGTGAACAAGGAAGCATTC
EST: gi|18040061|gb|BM308355.1|BM308355
EST:     TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAG                         GAGGTGGTGAATTTCTGCAAATCGTACTTTGTGGTGAACAAGGAAGCATTC
genomic: TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAGgtatagtctc ... gctcgagcagGAGGTGGTGAATTTCTGCAAATCGTACTTTGTGGTGAACAAGGAAGCATTC
EST: gi|192327192|gb|FK017729.1|FK017729
EST:     TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAG                         GAGGTGGTGAATTTCTGCAAATCGTACTTTGTGGTGAACAAG-AAGCATTC
genomic: TGCTTAGGCATAAGACTATAGACAAAGTTGTAATGTGTGACATAGATGAGgtatagtctc ... gctcgagcagGAGGTGGTGAATTTCTGCAAATCGTACTTTGTGGTGAACAAGGAAGCATTC