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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatttgcactcctaacaataaaaaatatcttgagatgtagataacattttttattatcttttatttttcattctcttttgtatgccatgttttag

Basic information

species Glycine max
transcript GLYMA20G28340.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28340.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g03200.t01 (Vitis vinifera), 5'ss of exon 3
GCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatttgcactcctaacaataaa--aaatatcttgagatg--tagataacattttttattatcttttatttttcattctcttttgtatgcca--tgttttag-------------
||||| || ||||||||||||||||| ||||| ||||  |||||||| |||||||| || |  || || ||||| || || |||||  |||| | |||| || ||| | || ||| | ||      |    ||    | |  || ||  ||||| || ||||| |    |  | |   |  |   || ||      |||| |             
GCTTTAGTCATTGATGGAAAGCTTCAAAGTGCTGAGATTGATGAATTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttctttttctcttctatcgatggtttgagcggctgagaaagcttaaatcccatttctttttatcatactatggtgaagattctccataagctgatcatttttgtatgcattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565859|gb|BE475368.1|BE475368
EST:     TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
genomic: TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
EST: gi|298184543|gb|HO029756.1|HO029756
EST:     TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAGGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
genomic: TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
EST: gi|298178935|gb|HO024670.1|HO024670
EST:     TTATCTACCACGAGTGGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
genomic: TTATCTACCACGAGT-GTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
EST: gi|298187240|gb|HO034389.1|HO034389
EST:     TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
genomic: TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
EST: gi|15203776|gb|BI426544.1|BI426544
EST:     TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
genomic: TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
EST: gi|8283967|gb|BE021526.1|BE021526
EST:     TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
genomic: TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
EST: gi|18040061|gb|BM308355.1|BM308355
EST:     TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
genomic: TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
EST: gi|298181023|gb|HO022462.1|HO022462
EST:     TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGA
genomic: TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGA
EST: gi|192327192|gb|FK017729.1|FK017729
EST:     TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGGAGGAGAAGGCTCCACTGCAAGGG
genomic: TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGG-AGGAGAAGGCTCCACTGCAAGGG
EST: gi|298188703|gb|HO035396.1|HO035396
EST:     TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
genomic: TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
EST: gi|298191561|gb|HO039040.1|HO039040
EST:     TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAG                         CCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA
genomic: TTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatt ... catgttttagCCCAAAGAATGTTTTTATTATGGGAGGAGGAGAAGGCTCCACTGCAAGGGA