1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttgtgcaatagtgcagccatgtcccatgcccacggtgcttataacactttgttacgtcgaattttgcacttacactatgcattgttgttttttgcacagCTAATAATGATAGGGGGAGGTATTCATCGGGAAGGGGCGGTTACAGGAATGATAGAAATGATAACTTCAGGGGCCGTGGCAACTTCAGTGGCGGCCGTGG
species | Glycine max |
transcript | GLYMA20G03060.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCCCGTTACCTTGGATGGCCGTAAACTTTTCA-TTGAAGAAAGGCGAG CTAATAATGATNAGGGG-AGGTATTCATCGGGAAGGGGCGGTTACAGGAATEST: gi|19348915|gb|BM893447.1|BM893447
genomic: CCTCCCGTTACCTTGGATGGCCGTAGACTTT-CAATTGAAGAAAGGCGAGgtaagtcagc ... ttttgcacagCTAATAATGAT-AGGGGGAGGTATTCATCGGGAAGGGGCGGTTACAGGAAT
EST: TCCTCCCGTTACCTTGGATGGCCGTAGACTTTCAATTGAAGAAAGGCGAG CTAATAATGATAGGGGGAGGTATTCATCGGGAAGGGGCGGTTACAGGAATGEST: gi|18723145|gb|BM523449.1|BM523449
genomic: TCCTCCCGTTACCTTGGATGGCCGTAGACTTTCAATTGAAGAAAGGCGAGgtaagtcagc ... ttttgcacagCTAATAATGATAGGGGGAGGTATTCATCGGGAAGGGGCGGTTACAGGAATG
EST: TCCTCCCGTTACCTTGGATGGCCGTAGACTTTCAATTGAAGAAAGGCGAG CTAATAATGATAGGGGGAGGTATTCATCGGGAAGGGGCGGTTACAGGAATGEST: gi|193474569|gb|FK440958.1|FK440958
genomic: TCCTCCCGTTACCTTGGATGGCCGTAGACTTTCAATTGAAGAAAGGCGAGgtaagtcagc ... ttttgcacagCTAATAATGATAGGGGGAGGTATTCATCGGGAAGGGGCGGTTACAGGAATG
EST: ATTGAAGAAAGGCGAG CTAATAATGATAGGGGGAGGTATTCATCGGGAAGGGGCGGTTACAGGAATG
genomic: ATTGAAGAAAGGCGAGgtaagtcagc ... ttttgcacagCTAATAATGATAGGGGGAGGTATTCATCGGGAAGGGGCGGTTACAGGAATG
cactttgttacgtcgaattttgcacttacactatgcattgttgttttttgcacagCTAATAATGATAGGGGGAGGTATTCATCGGGAAGGGGCGGTTACAGGAATGATAGAAATGATAACTTCAGGGGCCGTGGCAACTTCAGTGGCGGCCGTGG
cacttac putative branch site (score: 2)
ttgtttttt putative PPT
ttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtgcaatagtgcagccatgtcccatgcccacggtgcttataacactttgttacgtcgaattttgcacttacactatgcattgttgttttttgcacagCTAATAATGATAGGGGGAGGTATTCATCGGGAAGGGGCGGTTACAGGAATGATAGAAATGATAACTTCAGGGGCCGTGGCAACTTCAGTGGCGGCCGTGG
cttgtgc
- - - - - -gtgcagc
- - - - - - - - - catgtcc
- - - - - - - - - - - - -catgccc
- - - - - - - - - - - - - - - - - ggtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt