1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAACAGCAATCTTGTTTTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGCAAAGTGCACTTGAGgtattggcatgcttatatctccctcgttggatttctaacatttttgattttgcattctttttgttcatttacttgagtttcttaatatggaggtgttgta...
species | Glycine max |
transcript | GLYMA20G03060.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGCAAAGTGCACTTGAG GCCTCTCCTCCCGTTACCTTGGATGGCCGTAAACTTTTCA-TTGAAGAAAGEST: gi|19348915|gb|BM893447.1|BM893447
genomic: TTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGCAAAGTGCACTTGAGgtattggcat ... tctatttcagGCCTCTCCTCCCGTTACCTTGGATGGCCGTAGACTTT-CAATTGAAGAAAG
EST: TTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGCAAAGTGCACTTGAG GCCTCTCCTCCCGTTACCTTGGATGGCCGTAGACTTTCAATTGAAGAAAGGEST: gi|18723145|gb|BM523449.1|BM523449
genomic: TTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGCAAAGTGCACTTGAGgtattggcat ... tctatttcagGCCTCTCCTCCCGTTACCTTGGATGGCCGTAGACTTTCAATTGAAGAAAGG
EST: TTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGCAAAGTGCACTTGAG GCCTCTCCTCCCGTTACCTTGGATGGCCGTAGACTTTCAATTGAAGAAAGG
genomic: TTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGCAAAGTGCACTTGAGgtattggcat ... tctatttcagGCCTCTCCTCCCGTTACCTTGGATGGCCGTAGACTTTCAATTGAAGAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACAGCAATCTTGTTTTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGCAAAGTGCACTTGAGgtattggcatgcttatatctccctcgttggatttctaacatttttgattttgcattctttttgttcatttacttgagtttcttaatatggaggtgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc