1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagtctgttacaagcatttctgtgattttgtttatatagtgcacttcaacaacttcaagtattgatacaatgttttgctcttatttccagCAACAGCAATCTTGTTTTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGCAAAGTGCACTTGAG
species | Glycine max |
transcript | GLYMA20G03060.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAAATTTGGGCCCATTAAACAGGATGGTATTCAAGTTAGAAGTAATAAG CAACAGCAATCTTGTTTTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGEST: gi|19348915|gb|BM893447.1|BM893447
genomic: AGAAATTTGGGCCCATTAAACAGGATGGTATTCAAGTTAGAAGTAATAAGgttagtctgt ... ttatttccagCAACAGCAATCTTGTTTTGGTTTTGTGGAATTTGAATCGGCTACTTCAATG
EST: AGAAATTTGGGCCCATTAAACAGGATGGTATTCAAGTTAGAAGTAATAAG CAACAGCAATCTTGTTTTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGEST: gi|18723145|gb|BM523449.1|BM523449
genomic: AGAAATTTGGGCCCATTAAACAGGATGGTATTCAAGTTAGAAGTAATAAGgttagtctgt ... ttatttccagCAACAGCAATCTTGTTTTGGTTTTGTGGAATTTGAATCGGCTACTTCAATG
EST: GGATGGTATTCAAGTTAGAAGTAATAAG CAACAGCAATCTTGTTTTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGEST: gi|10232218|gb|BE801106.1|BE801106
genomic: GGATGGTATTCAAGTTAGAAGTAATAAGgttagtctgt ... ttatttccagCAACAGCAATCTTGTTTTGGTTTTGTGGAATTTGAATCGGCTACTTCAATG
EST: AAAAATTTGGGCCCATTAAACAGGATGGTATTCAAGTTAGAAGTAATAAG CAACAGCAATCTTGTTTTGGTTTTGTGGAATATGAATCGGCT
genomic: AGAAATTTGGGCCCATTAAACAGGATGGTATTCAAGTTAGAAGTAATAAGgttagtctgt ... ttatttccagCAACAGCAATCTTGTTTTGGTTTTGTGGAATTTGAATCGGCT
atagtgcacttcaacaacttcaagtattgatacaatgttttgctcttatttccagCAACAGCAATCTTGTTTTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGCAAAGTGCACTTGAG
tattgat putative branch site (score: 3)
ttttgctcttatttcc putative PPT
tattgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtctgttacaagcatttctgtgattttgtttatatagtgcacttcaacaacttcaagtattgatacaatgttttgctcttatttccagCAACAGCAATCTTGTTTTGGTTTTGTGGAATTTGAATCGGCTACTTCAATGCAAAGTGCACTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG