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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttatttatatgtttacatgtcttcaatgtatttttttttgtagtgtctgacccatatgtgactatttgcatttattgatttaagGTGAATGCACTGAAAGAAAATGCTGCTCCCTTCCATGTGAGGGTTTCCCCCGTGAAACTTGTTGAACAACCACGTGTTTCTAGCATACCTGCACCAGAAG

Basic information

species Glycine max
transcript GLYMA20G03060.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205495|gb|BU964748.1|BU964748
EST:     CTTCTAATAATGCACTGGAAGATACTCCAAAGAAGTCTTTTGCATCCATT                         GTGAATGCACTGAAAGAAAATGCTGCTCCCTTCCATGTGAGGGTTTCCCCC
genomic: CTTCTAATAATGCACTGGAAGATACTCCAAAGAAGTCTTTTGCATCCATTgtatgtttta ... ttgatttaagGTGAATGCACTGAAAGAAAATGCTGCTCCCTTCCATGTGAGGGTTTCCCCC
EST: gi|19348915|gb|BM893447.1|BM893447
EST:     CTTCAAATAATGCACTGGAAGATACTCCAAAGAAGTCTTTTGCATCCATT                         GTGAATGCACTGAAAGAAAATGCTGCTCCCTTCCATGTGAGGGTTTCCCCC
genomic: CTTCTAATAATGCACTGGAAGATACTCCAAAGAAGTCTTTTGCATCCATTgtatgtttta ... ttgatttaagGTGAATGCACTGAAAGAAAATGCTGCTCCCTTCCATGTGAGGGTTTCCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttttttgtagtgtctgacccatatgtgactatttgcatttattgatttaagGTGAATGCACTGAAAGAAAATGCTGCTCCCTTCCATGTGAGGGTTTCCCCCGTGAAACTTGTTGAACAACCACGTGTTTCTAGCATACCTGCACCAGAAG
                                           tattgat  putative branch site (score: 3)
                                 tatttgcatttattga  TA-rich tract